miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 167642 0.72 0.19119
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167511 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167388 0.68 0.352025
Target:  5'- -gGGGGCUCccgagggcggGGCCGggGCCuGgcggGGGCCa -3'
miRNA:   3'- gaCCCCGAG----------CCGGCggCGG-Ca---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167331 0.69 0.306897
Target:  5'- -cGGGGCgucccgucgucacgcUCGGCUGCacgcgcggcggCGCCGgccggGGGCUg -3'
miRNA:   3'- gaCCCCG---------------AGCCGGCG-----------GCGGCa----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167303 0.67 0.381581
Target:  5'- -aGGGGC-CGG-CGCCuGCaGgggGGGCCg -3'
miRNA:   3'- gaCCCCGaGCCgGCGG-CGgCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 159240 0.69 0.300458
Target:  5'- -gGGGGCcaggcuggcauuauaUCGGUgcaaCGCCGCCacgcGGGCCu -3'
miRNA:   3'- gaCCCCG---------------AGCCG----GCGGCGGca--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 158860 0.71 0.238042
Target:  5'- aUGGGGCUggUGGCCGCacccgccacguagcUGCCGgucucGGGCa -3'
miRNA:   3'- gACCCCGA--GCCGGCG--------------GCGGCa----CCCGg -5'
28861 3' -67.3 NC_006146.1 + 158266 0.67 0.381581
Target:  5'- aUGGGGCcUGGCCgggucuaaggugGCCuggccuggGCUGUGaGGCCu -3'
miRNA:   3'- gACCCCGaGCCGG------------CGG--------CGGCAC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 157832 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 157446 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 156692 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 155187 0.67 0.381581
Target:  5'- aUGGGGCcUGGCCgggucuaaggugGCCuggccuggGCUGUGaGGCCu -3'
miRNA:   3'- gACCCCGaGCCGG------------CGG--------CGGCAC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 154892 0.67 0.412746
Target:  5'- -gGGGGCagGGCC-UCGCCc-GGGCUg -3'
miRNA:   3'- gaCCCCGagCCGGcGGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 154754 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 154368 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 153615 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 153543 0.68 0.352025
Target:  5'- gUGGGGCUgcuugggaaCGGUggaGCUGCCGUGGucaGCUc -3'
miRNA:   3'- gACCCCGA---------GCCGg--CGGCGGCACC---CGG- -5'
28861 3' -67.3 NC_006146.1 + 152109 0.67 0.381581
Target:  5'- aUGGGGCcUGGCCgggucuaaggugGCCuggccuggGCUGUGaGGCCu -3'
miRNA:   3'- gACCCCGaGCCGG------------CGG--------CGGCAC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 151915 0.73 0.162592
Target:  5'- aCUGGGGuCUggcucCGGCCcuGCCGCCcucucuagGGGCCg -3'
miRNA:   3'- -GACCCC-GA-----GCCGG--CGGCGGca------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 151290 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.