miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 170684 0.66 0.470876
Target:  5'- -aGGGGCgcccCGGggaCCGUCGCgG-GGGCa -3'
miRNA:   3'- gaCCCCGa---GCC---GGCGGCGgCaCCCGg -5'
28861 3' -67.3 NC_006146.1 + 170539 0.66 0.426459
Target:  5'- -gGGGGCgCGGCgauuguCGCCGCCcucccucugcucccGUuGGCCg -3'
miRNA:   3'- gaCCCCGaGCCG------GCGGCGG--------------CAcCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170437 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 170306 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170183 0.68 0.352025
Target:  5'- -gGGGGCUCccgagggcggGGCCGggGCCuGgcggGGGCCa -3'
miRNA:   3'- gaCCCCGAG----------CCGGCggCGG-Ca---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170126 0.69 0.306897
Target:  5'- -cGGGGCgucccgucgucacgcUCGGCUGCacgcgcggcggCGCCGgccggGGGCUg -3'
miRNA:   3'- gaCCCCG---------------AGCCGGCG-----------GCGGCa----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170099 0.73 0.166429
Target:  5'- -aGGGGC-CGG-CGCCGCaGgggGGGCCg -3'
miRNA:   3'- gaCCCCGaGCCgGCGGCGgCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 169565 0.67 0.374038
Target:  5'- -gGGGGCUUccccggGGCCcgagcGCgCGUCGggugGGGCCu -3'
miRNA:   3'- gaCCCCGAG------CCGG-----CG-GCGGCa---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 169506 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 169375 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 169252 0.68 0.352025
Target:  5'- -gGGGGCUCccgagggcggGGCCGggGCCuGgcggGGGCCa -3'
miRNA:   3'- gaCCCCGAG----------CCGGCggCGG-Ca---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 169195 0.69 0.306897
Target:  5'- -cGGGGCgucccgucgucacgcUCGGCUGCacgcgcggcggCGCCGgccggGGGCUg -3'
miRNA:   3'- gaCCCCG---------------AGCCGGCG-----------GCGGCa----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 169167 0.67 0.381581
Target:  5'- -aGGGGC-CGG-CGCCuGCaGgggGGGCCg -3'
miRNA:   3'- gaCCCCGaGCCgGCGG-CGgCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 168633 0.68 0.344894
Target:  5'- -gGGGGCUUccccggGGCCcgagcGCgCGUCGgugGGGCCu -3'
miRNA:   3'- gaCCCCGAG------CCGG-----CG-GCGGCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 168574 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 168443 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 168320 0.68 0.352025
Target:  5'- -gGGGGCUCccgagggcggGGCCGggGCCuGgcggGGGCCa -3'
miRNA:   3'- gaCCCCGAG----------CCGGCggCGG-Ca---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 168263 0.69 0.306897
Target:  5'- -cGGGGCgucccgucgucacgcUCGGCUGCacgcgcggcggCGCCGgccggGGGCUg -3'
miRNA:   3'- gaCCCCG---------------AGCCGGCG-----------GCGGCa----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 168235 0.67 0.381581
Target:  5'- -aGGGGC-CGG-CGCCuGCaGgggGGGCCg -3'
miRNA:   3'- gaCCCCGaGCCgGCGG-CGgCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167700 0.67 0.374038
Target:  5'- -gGGGGCUUccccggGGCCcgagcGCgCGUCGggugGGGCCu -3'
miRNA:   3'- gaCCCCGAG------CCGG-----CG-GCGGCa---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.