miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 55693 0.81 0.044782
Target:  5'- --cGGGCaCGGCCGCCGCCGggGGGCUc -3'
miRNA:   3'- gacCCCGaGCCGGCGGCGGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 138066 0.71 0.224109
Target:  5'- -gGGGGa--GGCCGCCGCaaggaCGccGGGCCg -3'
miRNA:   3'- gaCCCCgagCCGGCGGCG-----GCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 158860 0.71 0.238042
Target:  5'- aUGGGGCUggUGGCCGCacccgccacguagcUGCCGgucucGGGCa -3'
miRNA:   3'- gACCCCGA--GCCGGCG--------------GCGGCa----CCCGg -5'
28861 3' -67.3 NC_006146.1 + 57040 0.66 0.470876
Target:  5'- -cGGGGCgaaGCCGCCaggguugagGCgGgaggGGGCCu -3'
miRNA:   3'- gaCCCCGagcCGGCGG---------CGgCa---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 151915 0.73 0.162592
Target:  5'- aCUGGGGuCUggcucCGGCCcuGCCGCCcucucuagGGGCCg -3'
miRNA:   3'- -GACCCC-GA-----GCCGG--CGGCGGca------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170099 0.73 0.166429
Target:  5'- -aGGGGC-CGG-CGCCGCaGgggGGGCCg -3'
miRNA:   3'- gaCCCCGaGCCgGCGGCGgCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167511 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 168443 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 53017 0.72 0.190752
Target:  5'- cCUGGgccucacgcggcuGGCcgCGGCCGCCGCCGagagguaagggGGGCg -3'
miRNA:   3'- -GACC-------------CCGa-GCCGGCGGCGGCa----------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 34236 0.71 0.224109
Target:  5'- -gGGGGa--GGCCGCCGCaaggaCGccGGGCCg -3'
miRNA:   3'- gaCCCCgagCCGGCGGCG-----GCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33170 0.72 0.195619
Target:  5'- gCUGGGcaccGC-CGcGCCGCCGCuCGguccUGGGCCu -3'
miRNA:   3'- -GACCC----CGaGC-CGGCGGCG-GC----ACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170306 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33100 0.78 0.079145
Target:  5'- uCUGGGGCagccgggUGGCCGCCGgCGgguucgccGGGCCg -3'
miRNA:   3'- -GACCCCGa------GCCGGCGGCgGCa-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 45115 0.72 0.204746
Target:  5'- ---cGGCUCGGCCGgugaCCGCCG-GGaGCCu -3'
miRNA:   3'- gaccCCGAGCCGGC----GGCGGCaCC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 136717 0.74 0.13467
Target:  5'- -gGGGGUggcCGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGa--GCCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 169375 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 130312 0.71 0.209447
Target:  5'- -cGGaGGUUCGGCCGCC-Ca--GGGCCa -3'
miRNA:   3'- gaCC-CCGAGCCGGCGGcGgcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 98300 0.71 0.227653
Target:  5'- gUGGGGCUgagggcgugcuccgUGGCCGUCugGCaCG-GGGCCg -3'
miRNA:   3'- gACCCCGA--------------GCCGGCGG--CG-GCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33226 0.74 0.137903
Target:  5'- -cGGGGCagccgggUGGCCGCCGgCGgguccgccGGGCCg -3'
miRNA:   3'- gaCCCCGa------GCCGGCGGCgGCa-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33348 0.72 0.178428
Target:  5'- -cGGGGCagccgggUGGCCGCCGguggguCCGccGGGCCg -3'
miRNA:   3'- gaCCCCGa------GCCGGCGGC------GGCa-CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.