miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 128654 0.69 0.911008
Target:  5'- cGCAuucGGGGACGGCGGGGacggGCa -3'
miRNA:   3'- uCGUca-UCUCUGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 123088 0.66 0.97591
Target:  5'- uGGCAGcccgagcccauGAGACGGCGGuGG-GCGc -3'
miRNA:   3'- -UCGUCau---------CUCUGCCGCU-CCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 26991 0.67 0.964381
Target:  5'- cGGCAGgggcaacgaAGGGaACGGCGAGaGUGuCGa -3'
miRNA:   3'- -UCGUCa--------UCUC-UGCCGCUC-CAC-GC- -5'
28863 3' -51.7 NC_006146.1 + 35882 0.68 0.934041
Target:  5'- uGgAGUGGGGGUGGUGGGGUGaCGc -3'
miRNA:   3'- uCgUCAUCUCUGCCGCUCCAC-GC- -5'
28863 3' -51.7 NC_006146.1 + 36505 0.72 0.770781
Target:  5'- cGGCAGgauagauGAGugGGUGAgGGUGCu -3'
miRNA:   3'- -UCGUCau-----CUCugCCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 151398 0.69 0.928677
Target:  5'- uGCAGgcgGGGGAUGGCGcGGcgGCa -3'
miRNA:   3'- uCGUCa--UCUCUGCCGCuCCa-CGc -5'
28863 3' -51.7 NC_006146.1 + 51466 0.77 0.508463
Target:  5'- gAGguGUGGAGAUgGGCGGGGgcUGCGg -3'
miRNA:   3'- -UCguCAUCUCUG-CCGCUCC--ACGC- -5'
28863 3' -51.7 NC_006146.1 + 100242 0.66 0.978906
Target:  5'- uGGCAGUGGGGGCGuucacgcaCGGGG-GCu -3'
miRNA:   3'- -UCGUCAUCUCUGCc-------GCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 51086 0.66 0.978906
Target:  5'- aGGCAGUGGGGAUGuuGAGGa--- -3'
miRNA:   3'- -UCGUCAUCUCUGCcgCUCCacgc -5'
28863 3' -51.7 NC_006146.1 + 169180 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 2475 0.69 0.904595
Target:  5'- uGGCGGUGuGGcCGGCGGGGgcagGCa -3'
miRNA:   3'- -UCGUCAUcUCuGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 40066 0.7 0.897925
Target:  5'- uGGCAcauGU--GGGCGGCGGGGUGgGg -3'
miRNA:   3'- -UCGU---CAucUCUGCCGCUCCACgC- -5'
28863 3' -51.7 NC_006146.1 + 56838 0.7 0.891002
Target:  5'- aGGCGGccucuGGCGGCGGGG-GCGg -3'
miRNA:   3'- -UCGUCaucu-CUGCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 166690 0.73 0.760861
Target:  5'- uGGCAGgggGGAGACGGgGcaaugggagggGGGUGUGa -3'
miRNA:   3'- -UCGUCa--UCUCUGCCgC-----------UCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 98851 0.67 0.960795
Target:  5'- --gGGaAGAauGGCGGCGGGGUGCc -3'
miRNA:   3'- ucgUCaUCU--CUGCCGCUCCACGc -5'
28863 3' -51.7 NC_006146.1 + 51718 0.67 0.960795
Target:  5'- cGGUGGUGGAGGacaUGGgGAGGcgGCGc -3'
miRNA:   3'- -UCGUCAUCUCU---GCCgCUCCa-CGC- -5'
28863 3' -51.7 NC_006146.1 + 170111 0.67 0.96773
Target:  5'- cGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 68743 0.67 0.970548
Target:  5'- gGGUGGUGGAGGCccaGGUGGccaagcuucaggcGGUGCGc -3'
miRNA:   3'- -UCGUCAUCUCUG---CCGCU-------------CCACGC- -5'
28863 3' -51.7 NC_006146.1 + 167316 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5'
28863 3' -51.7 NC_006146.1 + 168248 0.66 0.97643
Target:  5'- uGCAGgGGGGGcCGGCGGGGcGUc -3'
miRNA:   3'- uCGUCaUCUCU-GCCGCUCCaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.