miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28873 3' -46.5 NC_006146.1 + 52446 0.66 0.999951
Target:  5'- -uUUGGggUcgacgcccUG-GAGAGG-GGCCUCa -3'
miRNA:   3'- uuAAUCuuA--------ACaCUCUUCuCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 167579 0.66 0.999951
Target:  5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3'
miRNA:   3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 168511 0.66 0.999951
Target:  5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3'
miRNA:   3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 169443 0.66 0.999951
Target:  5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3'
miRNA:   3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 170374 0.66 0.999951
Target:  5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3'
miRNA:   3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 158382 0.66 0.999934
Target:  5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 155303 0.66 0.999934
Target:  5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 152225 0.66 0.999934
Target:  5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 149147 0.66 0.999934
Target:  5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 146069 0.66 0.999934
Target:  5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 142991 0.66 0.999934
Target:  5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 150076 0.66 0.999934
Target:  5'- ---gAGAGgcagGGGAAGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUaacaCUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 145278 0.66 0.999884
Target:  5'- -cUUGGAGc--UGAGggG-GGCCUCg -3'
miRNA:   3'- uuAAUCUUaacACUCuuCuCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 84434 0.66 0.999884
Target:  5'- ---gAGGAUg--GAGAAGgaAGGCCUCc -3'
miRNA:   3'- uuaaUCUUAacaCUCUUC--UCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 7299 0.67 0.999674
Target:  5'- -----------cGGGGAGAGGCCUCa -3'
miRNA:   3'- uuaaucuuaacaCUCUUCUCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 41029 0.67 0.999674
Target:  5'- ---cAGAGccGUGGGAGGAgGGCCUa- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCU-CCGGAga -5'
28873 3' -46.5 NC_006146.1 + 105562 0.67 0.999674
Target:  5'- ---gAGGAUg--GGGAGGAGGCCg-- -3'
miRNA:   3'- uuaaUCUUAacaCUCUUCUCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 107099 0.67 0.999674
Target:  5'- ---gGGAGUgggUGggucUGGGAAGGGGCCUUc -3'
miRNA:   3'- uuaaUCUUA---AC----ACUCUUCUCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 150675 0.69 0.998495
Target:  5'- ---gGGAGggGUGGGGAGuGGCCa-- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCuCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 153752 0.69 0.998495
Target:  5'- ---gGGAGggGUGGGGAGuGGCCa-- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCuCCGGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.