miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28873 5' -55.1 NC_006146.1 + 36308 1.06 0.005162
Target:  5'- aAGAGAGCCCUCCCCCCACAAUCAAAAc -3'
miRNA:   3'- -UCUCUCGGGAGGGGGGUGUUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 25897 0.78 0.318177
Target:  5'- uGGAGAGCuCCUCCCugCCCACcuUCGAGAg -3'
miRNA:   3'- -UCUCUCG-GGAGGG--GGGUGuuAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 9659 0.74 0.499501
Target:  5'- gGGAcGGGCCCUuauacugCCCCCCACAuauGUCAGc- -3'
miRNA:   3'- -UCU-CUCGGGA-------GGGGGGUGU---UAGUUuu -5'
28873 5' -55.1 NC_006146.1 + 104646 0.71 0.664428
Target:  5'- cGAGA-CCCUgCCCCCCACcGUgGAGAa -3'
miRNA:   3'- uCUCUcGGGA-GGGGGGUGuUAgUUUU- -5'
28873 5' -55.1 NC_006146.1 + 60491 0.71 0.664428
Target:  5'- cGGGGGGCCagCUCCCCCgACGG-CGAGGg -3'
miRNA:   3'- -UCUCUCGG--GAGGGGGgUGUUaGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 130544 0.7 0.745773
Target:  5'- cAGGGGGCCUUCUCCgCCGCAGa----- -3'
miRNA:   3'- -UCUCUCGGGAGGGG-GGUGUUaguuuu -5'
28873 5' -55.1 NC_006146.1 + 44866 0.7 0.764308
Target:  5'- aAGGGAGCCCagUCCCUCCcggcccaGCAG-CAGAAg -3'
miRNA:   3'- -UCUCUCGGG--AGGGGGG-------UGUUaGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 157787 0.7 0.765271
Target:  5'- cGGGAGCCC-CCgUCCACAAaCAGGg -3'
miRNA:   3'- uCUCUCGGGaGGgGGGUGUUaGUUUu -5'
28873 5' -55.1 NC_006146.1 + 151262 0.7 0.765271
Target:  5'- gGGAaAGCCCUCCUCCCcCAgacacucgauAUCGAAGg -3'
miRNA:   3'- -UCUcUCGGGAGGGGGGuGU----------UAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 96906 0.69 0.78428
Target:  5'- cGGGcAGCaCCUCCUCC-GCGAUCGAGAa -3'
miRNA:   3'- uCUC-UCG-GGAGGGGGgUGUUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 111387 0.69 0.78428
Target:  5'- -aAGAGCCCgUCCCUCACGAugcgcUCAGAGa -3'
miRNA:   3'- ucUCUCGGGaGGGGGGUGUU-----AGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 131084 0.69 0.793576
Target:  5'- aGGGGuAGCCUaCCCCCCGCuAGUCc--- -3'
miRNA:   3'- -UCUC-UCGGGaGGGGGGUG-UUAGuuuu -5'
28873 5' -55.1 NC_006146.1 + 105695 0.69 0.811707
Target:  5'- aAGGGAGgagcuauuUCCUCCCCCUGcCAGUCAc-- -3'
miRNA:   3'- -UCUCUC--------GGGAGGGGGGU-GUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 129876 0.68 0.829164
Target:  5'- ---aGGCCCUCCUCCCACGGcUCu--- -3'
miRNA:   3'- ucucUCGGGAGGGGGGUGUU-AGuuuu -5'
28873 5' -55.1 NC_006146.1 + 141926 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 145004 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 151160 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 154238 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 157316 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 148082 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.