Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28873 | 5' | -55.1 | NC_006146.1 | + | 2295 | 0.67 | 0.88403 |
Target: 5'- cGGAGccaGGCCCUCCUUCCgACAGUUc--- -3' miRNA: 3'- -UCUC---UCGGGAGGGGGG-UGUUAGuuuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 8287 | 0.66 | 0.916432 |
Target: 5'- uGGGAGCCC-CaCUCCCGgGGUCGc-- -3' miRNA: 3'- uCUCUCGGGaG-GGGGGUgUUAGUuuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 9659 | 0.74 | 0.499501 |
Target: 5'- gGGAcGGGCCCUuauacugCCCCCCACAuauGUCAGc- -3' miRNA: 3'- -UCU-CUCGGGA-------GGGGGGUGU---UAGUUuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 10956 | 0.67 | 0.897711 |
Target: 5'- aAGuuAGCCCagCCUgCCACAGUCAc-- -3' miRNA: 3'- -UCucUCGGGa-GGGgGGUGUUAGUuuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 21860 | 0.67 | 0.88403 |
Target: 5'- aGGAGAGCagCCgagccaCCCCCACAAggGGAAg -3' miRNA: 3'- -UCUCUCG--GGag----GGGGGUGUUagUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 25897 | 0.78 | 0.318177 |
Target: 5'- uGGAGAGCuCCUCCCugCCCACcuUCGAGAg -3' miRNA: 3'- -UCUCUCG-GGAGGG--GGGUGuuAGUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 26627 | 0.67 | 0.869425 |
Target: 5'- gAGAGuGCCUcugaggUCUCCCCGCAucUCAAu- -3' miRNA: 3'- -UCUCuCGGG------AGGGGGGUGUu-AGUUuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 31031 | 0.66 | 0.922183 |
Target: 5'- cAGAGAcGUaaucccacaCCUCCCCCCAUGgcGUCAc-- -3' miRNA: 3'- -UCUCU-CG---------GGAGGGGGGUGU--UAGUuuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 31304 | 0.66 | 0.93294 |
Target: 5'- uGGAG-GCCUUcuccuccucgCCCCCCGCAGccUCAu-- -3' miRNA: 3'- -UCUCuCGGGA----------GGGGGGUGUU--AGUuuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 36308 | 1.06 | 0.005162 |
Target: 5'- aAGAGAGCCCUCCCCCCACAAUCAAAAc -3' miRNA: 3'- -UCUCUCGGGAGGGGGGUGUUAGUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 40540 | 0.66 | 0.922183 |
Target: 5'- gGGGGAGCUCUCagCCCCucugCACAGUgAAGc -3' miRNA: 3'- -UCUCUCGGGAG--GGGG----GUGUUAgUUUu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 41327 | 0.66 | 0.93294 |
Target: 5'- gAGGGAGCUgUCCCUUCACcacCAGGGg -3' miRNA: 3'- -UCUCUCGGgAGGGGGGUGuuaGUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 44866 | 0.7 | 0.764308 |
Target: 5'- aAGGGAGCCCagUCCCUCCcggcccaGCAG-CAGAAg -3' miRNA: 3'- -UCUCUCGGG--AGGGGGG-------UGUUaGUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 47184 | 0.66 | 0.916432 |
Target: 5'- gGGAGAGCCCgccgCCgCCCCGagcgcCAGGc -3' miRNA: 3'- -UCUCUCGGGa---GG-GGGGUguua-GUUUu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 48282 | 0.66 | 0.924413 |
Target: 5'- aAGAGGgccccggccuccuccGCCCcucgCCCUCCACcGUCGGAGg -3' miRNA: 3'- -UCUCU---------------CGGGa---GGGGGGUGuUAGUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 56149 | 0.68 | 0.853937 |
Target: 5'- cGAGAGCaCCUCCCCgCgGCcGUCc--- -3' miRNA: 3'- uCUCUCG-GGAGGGG-GgUGuUAGuuuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 60491 | 0.71 | 0.664428 |
Target: 5'- cGGGGGGCCagCUCCCCCgACGG-CGAGGg -3' miRNA: 3'- -UCUCUCGG--GAGGGGGgUGUUaGUUUU- -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 67500 | 0.68 | 0.861788 |
Target: 5'- aGGGGAGCacgaCgCCCCCCACuggCAGGc -3' miRNA: 3'- -UCUCUCGg---GaGGGGGGUGuuaGUUUu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 78590 | 0.66 | 0.927685 |
Target: 5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3' miRNA: 3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5' |
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28873 | 5' | -55.1 | NC_006146.1 | + | 78620 | 0.66 | 0.927685 |
Target: 5'- --cGGGCCCgCCCCCCAgCAG-CAGc- -3' miRNA: 3'- ucuCUCGGGaGGGGGGU-GUUaGUUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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