miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28873 5' -55.1 NC_006146.1 + 130544 0.7 0.745773
Target:  5'- cAGGGGGCCUUCUCCgCCGCAGa----- -3'
miRNA:   3'- -UCUCUCGGGAGGGG-GGUGUUaguuuu -5'
28873 5' -55.1 NC_006146.1 + 31031 0.66 0.922183
Target:  5'- cAGAGAcGUaaucccacaCCUCCCCCCAUGgcGUCAc-- -3'
miRNA:   3'- -UCUCU-CG---------GGAGGGGGGUGU--UAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 48282 0.66 0.924413
Target:  5'- aAGAGGgccccggccuccuccGCCCcucgCCCUCCACcGUCGGAGg -3'
miRNA:   3'- -UCUCU---------------CGGGa---GGGGGGUGuUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 31304 0.66 0.93294
Target:  5'- uGGAG-GCCUUcuccuccucgCCCCCCGCAGccUCAu-- -3'
miRNA:   3'- -UCUCuCGGGA----------GGGGGGUGUU--AGUuuu -5'
28873 5' -55.1 NC_006146.1 + 105695 0.69 0.811707
Target:  5'- aAGGGAGgagcuauuUCCUCCCCCUGcCAGUCAc-- -3'
miRNA:   3'- -UCUCUC--------GGGAGGGGGGU-GUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 104233 0.68 0.835101
Target:  5'- gGGAGGuGCCCcgCCCCCCuCAGgauauagcacuugcUCAAGAg -3'
miRNA:   3'- -UCUCU-CGGGa-GGGGGGuGUU--------------AGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 67500 0.68 0.861788
Target:  5'- aGGGGAGCacgaCgCCCCCCACuggCAGGc -3'
miRNA:   3'- -UCUCUCGg---GaGGGGGGUGuuaGUUUu -5'
28873 5' -55.1 NC_006146.1 + 162193 0.67 0.876841
Target:  5'- uGGGGuGCaaaCUCCgCCCCACAGguggcUCAGAu -3'
miRNA:   3'- -UCUCuCGg--GAGG-GGGGUGUU-----AGUUUu -5'
28873 5' -55.1 NC_006146.1 + 111041 0.66 0.904195
Target:  5'- uGAuGGGCgacaCCUCCUCCCugAGUCAc-- -3'
miRNA:   3'- uCU-CUCG----GGAGGGGGGugUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 155991 0.66 0.916432
Target:  5'- cGAGAGCuCCgccaCCUCCgggggCACGGUCGAGAa -3'
miRNA:   3'- uCUCUCG-GGa---GGGGG-----GUGUUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 111456 0.66 0.910436
Target:  5'- cGGGGAGUCCUgCCCCCUGCc------- -3'
miRNA:   3'- -UCUCUCGGGA-GGGGGGUGuuaguuuu -5'
28873 5' -55.1 NC_006146.1 + 10956 0.67 0.897711
Target:  5'- aAGuuAGCCCagCCUgCCACAGUCAc-- -3'
miRNA:   3'- -UCucUCGGGa-GGGgGGUGUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 157787 0.7 0.765271
Target:  5'- cGGGAGCCC-CCgUCCACAAaCAGGg -3'
miRNA:   3'- uCUCUCGGGaGGgGGGUGUUaGUUUu -5'
28873 5' -55.1 NC_006146.1 + 8287 0.66 0.916432
Target:  5'- uGGGAGCCC-CaCUCCCGgGGUCGc-- -3'
miRNA:   3'- uCUCUCGGGaG-GGGGGUgUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 151262 0.7 0.765271
Target:  5'- gGGAaAGCCCUCCUCCCcCAgacacucgauAUCGAAGg -3'
miRNA:   3'- -UCUcUCGGGAGGGGGGuGU----------UAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 2295 0.67 0.88403
Target:  5'- cGGAGccaGGCCCUCCUUCCgACAGUUc--- -3'
miRNA:   3'- -UCUC---UCGGGAGGGGGG-UGUUAGuuuu -5'
28873 5' -55.1 NC_006146.1 + 47184 0.66 0.916432
Target:  5'- gGGAGAGCCCgccgCCgCCCCGagcgcCAGGc -3'
miRNA:   3'- -UCUCUCGGGa---GG-GGGGUguua-GUUUu -5'
28873 5' -55.1 NC_006146.1 + 40540 0.66 0.922183
Target:  5'- gGGGGAGCUCUCagCCCCucugCACAGUgAAGc -3'
miRNA:   3'- -UCUCUCGGGAG--GGGG----GUGUUAgUUUu -5'
28873 5' -55.1 NC_006146.1 + 96906 0.69 0.78428
Target:  5'- cGGGcAGCaCCUCCUCC-GCGAUCGAGAa -3'
miRNA:   3'- uCUC-UCG-GGAGGGGGgUGUUAGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 56149 0.68 0.853937
Target:  5'- cGAGAGCaCCUCCCCgCgGCcGUCc--- -3'
miRNA:   3'- uCUCUCG-GGAGGGG-GgUGuUAGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.