miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28878 5' -52.2 NC_006146.1 + 10574 0.66 0.98384
Target:  5'- --uUCCugUGg-UCUCCCCACGGGa- -3'
miRNA:   3'- uuuAGGugGCaaAGGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 52953 0.66 0.98384
Target:  5'- -uAUCCcguuACCGUUcauggCCCUCCGCGGGg- -3'
miRNA:   3'- uuUAGG----UGGCAAa----GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 109934 0.66 0.981838
Target:  5'- -cAUCCACCaagGUgaCCCCCCACc---- -3'
miRNA:   3'- uuUAGGUGG---CAaaGGGGGGUGcuuau -5'
28878 5' -52.2 NC_006146.1 + 79639 0.66 0.979654
Target:  5'- aGGGUCacagGCCGgcgagCCCCCCAUGGGg- -3'
miRNA:   3'- -UUUAGg---UGGCaaa--GGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 92056 0.67 0.97471
Target:  5'- gGAGUCUGCCGgaguucUCUCCCC-CGGAUc -3'
miRNA:   3'- -UUUAGGUGGCaa----AGGGGGGuGCUUAu -5'
28878 5' -52.2 NC_006146.1 + 31809 0.67 0.97471
Target:  5'- uAGUCCGCacugaGUUacagCCCCCCGCGc--- -3'
miRNA:   3'- uUUAGGUGg----CAAa---GGGGGGUGCuuau -5'
28878 5' -52.2 NC_006146.1 + 1131 0.67 0.97471
Target:  5'- --cUCCACgCGccggUgCCCCCGCGAGg- -3'
miRNA:   3'- uuuAGGUG-GCaa--AgGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 2063 0.67 0.97471
Target:  5'- --cUCCACgCGccggUgCCCCCGCGAGg- -3'
miRNA:   3'- uuuAGGUG-GCaa--AgGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 2995 0.67 0.97471
Target:  5'- --cUCCACgCGccggUgCCCCCGCGAGg- -3'
miRNA:   3'- uuuAGGUG-GCaa--AgGGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 68956 0.67 0.971644
Target:  5'- --cUCCGCCGUUgUCucaucggucaccgCCCCCGCGGc-- -3'
miRNA:   3'- uuuAGGUGGCAA-AG-------------GGGGGUGCUuau -5'
28878 5' -52.2 NC_006146.1 + 36136 0.67 0.965735
Target:  5'- --uUCCACCGUggaaaUCCCaCUCugGGAc- -3'
miRNA:   3'- uuuAGGUGGCAa----AGGG-GGGugCUUau -5'
28878 5' -52.2 NC_006146.1 + 104178 0.67 0.962299
Target:  5'- cAGAUCCagucgcaggGCCGUcugCgCCCCCACGGGg- -3'
miRNA:   3'- -UUUAGG---------UGGCAaa-G-GGGGGUGCUUau -5'
28878 5' -52.2 NC_006146.1 + 798 0.68 0.95863
Target:  5'- ---cCCGCCGgccCCCCCUGCGGc-- -3'
miRNA:   3'- uuuaGGUGGCaaaGGGGGGUGCUuau -5'
28878 5' -52.2 NC_006146.1 + 3356 0.68 0.95863
Target:  5'- --cUCCACaCGUggCCUCCCAgGAGa- -3'
miRNA:   3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 2424 0.68 0.95863
Target:  5'- --cUCCACaCGUggCCUCCCAgGAGa- -3'
miRNA:   3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 561 0.68 0.95863
Target:  5'- --cUCCACaCGUggCCUCCCAgGAGa- -3'
miRNA:   3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 1492 0.68 0.95863
Target:  5'- --cUCCACaCGUggCCUCCCAgGAGa- -3'
miRNA:   3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5'
28878 5' -52.2 NC_006146.1 + 116094 0.68 0.950576
Target:  5'- --cUCCGCCGggUCCUCuCCAaCGAGc- -3'
miRNA:   3'- uuuAGGUGGCaaAGGGG-GGU-GCUUau -5'
28878 5' -52.2 NC_006146.1 + 127823 0.68 0.950576
Target:  5'- aAAAUCCGCCuccagCCuCCCCugGAGg- -3'
miRNA:   3'- -UUUAGGUGGcaaa-GG-GGGGugCUUau -5'
28878 5' -52.2 NC_006146.1 + 31861 0.68 0.941537
Target:  5'- uGGGUCCA-CGcUUCCgCCCCugGGAUGc -3'
miRNA:   3'- -UUUAGGUgGCaAAGG-GGGGugCUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.