Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28878 | 5' | -52.2 | NC_006146.1 | + | 10574 | 0.66 | 0.98384 |
Target: 5'- --uUCCugUGg-UCUCCCCACGGGa- -3' miRNA: 3'- uuuAGGugGCaaAGGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 52953 | 0.66 | 0.98384 |
Target: 5'- -uAUCCcguuACCGUUcauggCCCUCCGCGGGg- -3' miRNA: 3'- uuUAGG----UGGCAAa----GGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 109934 | 0.66 | 0.981838 |
Target: 5'- -cAUCCACCaagGUgaCCCCCCACc---- -3' miRNA: 3'- uuUAGGUGG---CAaaGGGGGGUGcuuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 79639 | 0.66 | 0.979654 |
Target: 5'- aGGGUCacagGCCGgcgagCCCCCCAUGGGg- -3' miRNA: 3'- -UUUAGg---UGGCaaa--GGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 92056 | 0.67 | 0.97471 |
Target: 5'- gGAGUCUGCCGgaguucUCUCCCC-CGGAUc -3' miRNA: 3'- -UUUAGGUGGCaa----AGGGGGGuGCUUAu -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 31809 | 0.67 | 0.97471 |
Target: 5'- uAGUCCGCacugaGUUacagCCCCCCGCGc--- -3' miRNA: 3'- uUUAGGUGg----CAAa---GGGGGGUGCuuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 1131 | 0.67 | 0.97471 |
Target: 5'- --cUCCACgCGccggUgCCCCCGCGAGg- -3' miRNA: 3'- uuuAGGUG-GCaa--AgGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 2063 | 0.67 | 0.97471 |
Target: 5'- --cUCCACgCGccggUgCCCCCGCGAGg- -3' miRNA: 3'- uuuAGGUG-GCaa--AgGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 2995 | 0.67 | 0.97471 |
Target: 5'- --cUCCACgCGccggUgCCCCCGCGAGg- -3' miRNA: 3'- uuuAGGUG-GCaa--AgGGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 68956 | 0.67 | 0.971644 |
Target: 5'- --cUCCGCCGUUgUCucaucggucaccgCCCCCGCGGc-- -3' miRNA: 3'- uuuAGGUGGCAA-AG-------------GGGGGUGCUuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 36136 | 0.67 | 0.965735 |
Target: 5'- --uUCCACCGUggaaaUCCCaCUCugGGAc- -3' miRNA: 3'- uuuAGGUGGCAa----AGGG-GGGugCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 104178 | 0.67 | 0.962299 |
Target: 5'- cAGAUCCagucgcaggGCCGUcugCgCCCCCACGGGg- -3' miRNA: 3'- -UUUAGG---------UGGCAaa-G-GGGGGUGCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 798 | 0.68 | 0.95863 |
Target: 5'- ---cCCGCCGgccCCCCCUGCGGc-- -3' miRNA: 3'- uuuaGGUGGCaaaGGGGGGUGCUuau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 3356 | 0.68 | 0.95863 |
Target: 5'- --cUCCACaCGUggCCUCCCAgGAGa- -3' miRNA: 3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 2424 | 0.68 | 0.95863 |
Target: 5'- --cUCCACaCGUggCCUCCCAgGAGa- -3' miRNA: 3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 561 | 0.68 | 0.95863 |
Target: 5'- --cUCCACaCGUggCCUCCCAgGAGa- -3' miRNA: 3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 1492 | 0.68 | 0.95863 |
Target: 5'- --cUCCACaCGUggCCUCCCAgGAGa- -3' miRNA: 3'- uuuAGGUG-GCAaaGGGGGGUgCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 116094 | 0.68 | 0.950576 |
Target: 5'- --cUCCGCCGggUCCUCuCCAaCGAGc- -3' miRNA: 3'- uuuAGGUGGCaaAGGGG-GGU-GCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 127823 | 0.68 | 0.950576 |
Target: 5'- aAAAUCCGCCuccagCCuCCCCugGAGg- -3' miRNA: 3'- -UUUAGGUGGcaaa-GG-GGGGugCUUau -5' |
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28878 | 5' | -52.2 | NC_006146.1 | + | 31861 | 0.68 | 0.941537 |
Target: 5'- uGGGUCCA-CGcUUCCgCCCCugGGAUGc -3' miRNA: 3'- -UUUAGGUgGCaAAGG-GGGGugCUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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