miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28881 3' -48.1 NC_006146.1 + 125005 0.66 0.99863
Target:  5'- --uUCAGGUaGCCGGCGUcCg- -3'
miRNA:   3'- gauAGUCCAgUGGCCGCGuGau -5'
28881 3' -48.1 NC_006146.1 + 20616 0.66 0.99863
Target:  5'- --uUCAGGcUCACCGgGgGCACc- -3'
miRNA:   3'- gauAGUCC-AGUGGC-CgCGUGau -5'
28881 3' -48.1 NC_006146.1 + 143814 0.66 0.998332
Target:  5'- -----cGGUCACCGGCuCACa- -3'
miRNA:   3'- gauaguCCAGUGGCCGcGUGau -5'
28881 3' -48.1 NC_006146.1 + 44763 0.66 0.998332
Target:  5'- uUGUCGGGgC-CCGGCGgGCg- -3'
miRNA:   3'- gAUAGUCCaGuGGCCGCgUGau -5'
28881 3' -48.1 NC_006146.1 + 75758 0.66 0.997089
Target:  5'- --cUCAGGUCGCCGG-GCu--- -3'
miRNA:   3'- gauAGUCCAGUGGCCgCGugau -5'
28881 3' -48.1 NC_006146.1 + 4929 0.66 0.997089
Target:  5'- gCUGUCGGGUgGCCGuGCuCugUGc -3'
miRNA:   3'- -GAUAGUCCAgUGGC-CGcGugAU- -5'
28881 3' -48.1 NC_006146.1 + 147066 0.67 0.996534
Target:  5'- ---cCAGGUC-CCGGCGUAg-- -3'
miRNA:   3'- gauaGUCCAGuGGCCGCGUgau -5'
28881 3' -48.1 NC_006146.1 + 98843 0.67 0.996534
Target:  5'- cCUAcCAGGUCACUuuuacaaaGGCGC-CUGa -3'
miRNA:   3'- -GAUaGUCCAGUGG--------CCGCGuGAU- -5'
28881 3' -48.1 NC_006146.1 + 164296 0.67 0.995162
Target:  5'- uUAUgAGGUcCGCCGGgGcCACUGc -3'
miRNA:   3'- gAUAgUCCA-GUGGCCgC-GUGAU- -5'
28881 3' -48.1 NC_006146.1 + 68974 0.67 0.993377
Target:  5'- -gGUCAccgcccccgcGGcCACCGGCGCAUUu -3'
miRNA:   3'- gaUAGU----------CCaGUGGCCGCGUGAu -5'
28881 3' -48.1 NC_006146.1 + 68187 0.68 0.988247
Target:  5'- -cGUCAGGaCGCgGGCGCAg-- -3'
miRNA:   3'- gaUAGUCCaGUGgCCGCGUgau -5'
28881 3' -48.1 NC_006146.1 + 170702 0.69 0.986577
Target:  5'- gUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- gAuaGUCCa-GUGGCCGCGUgau -5'
28881 3' -48.1 NC_006146.1 + 61294 0.7 0.962387
Target:  5'- cCUGUCGcGuGUUugCGGCGCGCg- -3'
miRNA:   3'- -GAUAGU-C-CAGugGCCGCGUGau -5'
28881 3' -48.1 NC_006146.1 + 117926 0.71 0.958512
Target:  5'- ---gCAGGUcCGCCuGCGCACUAc -3'
miRNA:   3'- gauaGUCCA-GUGGcCGCGUGAU- -5'
28881 3' -48.1 NC_006146.1 + 42526 0.71 0.94996
Target:  5'- -gGUCAGGUUGauGGCGUACUGg -3'
miRNA:   3'- gaUAGUCCAGUggCCGCGUGAU- -5'
28881 3' -48.1 NC_006146.1 + 27792 0.71 0.94996
Target:  5'- --cUCAGGUCACCGGCuccaggaaACUAa -3'
miRNA:   3'- gauAGUCCAGUGGCCGcg------UGAU- -5'
28881 3' -48.1 NC_006146.1 + 168838 0.71 0.940307
Target:  5'- cCUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- -GAuaGUCCa-GUGGCCGCGUgau -5'
28881 3' -48.1 NC_006146.1 + 169770 0.71 0.940307
Target:  5'- cCUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- -GAuaGUCCa-GUGGCCGCGUgau -5'
28881 3' -48.1 NC_006146.1 + 167906 0.71 0.940307
Target:  5'- cCUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- -GAuaGUCCa-GUGGCCGCGUgau -5'
28881 3' -48.1 NC_006146.1 + 124988 0.72 0.929528
Target:  5'- cCUAcggCAcGGUCACCGGCcggGCGCUGa -3'
miRNA:   3'- -GAUa--GU-CCAGUGGCCG---CGUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.