miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 45527 0.65 0.636517
Target:  5'- gGugGGGGCCUgGGccuccuuGGGCUUGGCCGc- -3'
miRNA:   3'- -CugUCCUGGGgCC-------CCCGAGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 33200 0.66 0.631688
Target:  5'- ---uGGGCCuCCGGGuGCUCcuggugcuccggggcAGCCGGGu -3'
miRNA:   3'- cuguCCUGG-GGCCCcCGAG---------------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 162379 0.66 0.627824
Target:  5'- --aGGGugCaggaCGGGGGCUUuGCCcuGGGa -3'
miRNA:   3'- cugUCCugGg---GCCCCCGAGuCGG--UCC- -5'
28883 5' -63.5 NC_006146.1 + 54816 0.66 0.627824
Target:  5'- gGAgAGGACCCggCGGaGGGCg-GGCCAa- -3'
miRNA:   3'- -CUgUCCUGGG--GCC-CCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 153411 0.66 0.627824
Target:  5'- --aGGGAguUCCCGGGGGCg-GGUguGGc -3'
miRNA:   3'- cugUCCU--GGGGCCCCCGagUCGguCC- -5'
28883 5' -63.5 NC_006146.1 + 128175 0.66 0.627824
Target:  5'- uGCAGcGACgCCGGGaGGC--GGcCCAGGg -3'
miRNA:   3'- cUGUC-CUGgGGCCC-CCGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 101962 0.66 0.627824
Target:  5'- uGGCuaGGGGCUCCGGGcucuggcuagaGGCUCuggcucccuuGCUAGGg -3'
miRNA:   3'- -CUG--UCCUGGGGCCC-----------CCGAGu---------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 3196 0.66 0.626859
Target:  5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3'
miRNA:   3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 56559 0.66 0.626859
Target:  5'- -cCAGGcCCCCGuccaccuccgucaGGGGC--GGCCGGGc -3'
miRNA:   3'- cuGUCCuGGGGC-------------CCCCGagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 1332 0.66 0.626859
Target:  5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3'
miRNA:   3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 2264 0.66 0.626859
Target:  5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3'
miRNA:   3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 99049 0.66 0.622031
Target:  5'- -cCAGGGCCCggcgggugucggCGGugccguagugguggaGGGCccgCAGCCAGGu -3'
miRNA:   3'- cuGUCCUGGG------------GCC---------------CCCGa--GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 129141 0.66 0.618169
Target:  5'- cGCAGGGCCuCCGGcGGGa--AGCCcacccgucucAGGg -3'
miRNA:   3'- cUGUCCUGG-GGCC-CCCgagUCGG----------UCC- -5'
28883 5' -63.5 NC_006146.1 + 69702 0.66 0.618169
Target:  5'- -cCAGGuggaucuucaGCUCCGaGGGGCgCAGCguGGa -3'
miRNA:   3'- cuGUCC----------UGGGGC-CCCCGaGUCGguCC- -5'
28883 5' -63.5 NC_006146.1 + 4363 0.66 0.618169
Target:  5'- cGACGuGGccacgGCCCCGcGGGCUCc-CCAGGc -3'
miRNA:   3'- -CUGU-CC-----UGGGGCcCCCGAGucGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 117581 0.66 0.617204
Target:  5'- cGCcGGGCCuCCucGGGCUCggacuccGGCCAGGg -3'
miRNA:   3'- cUGuCCUGG-GGccCCCGAG-------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 124531 0.66 0.608524
Target:  5'- gGACGGGGgCCUGGGGGagcugCuGUCGGa -3'
miRNA:   3'- -CUGUCCUgGGGCCCCCga---GuCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 580 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 1511 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 2443 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.