miRNA display CGI


Results 41 - 60 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 1218 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 3082 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 162399 0.7 0.385221
Target:  5'- -cCGGGACCCCGGuGGGCcaggaUGGUgGGGa -3'
miRNA:   3'- cuGUCCUGGGGCC-CCCGa----GUCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 34032 0.7 0.385221
Target:  5'- aGGCGGGcguggUCCCGGGGccuauGC-CGGCCGGGg -3'
miRNA:   3'- -CUGUCCu----GGGGCCCC-----CGaGUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135950 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 32120 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 33324 0.7 0.39233
Target:  5'- --uGGGGCUCCGGGGuccggguGCUCcggggcAGCCGGGu -3'
miRNA:   3'- cugUCCUGGGGCCCC-------CGAG------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44313 0.69 0.416636
Target:  5'- aGugGGGGCUggggccguggcagCCGGGGGCuUCuGCaCAGGu -3'
miRNA:   3'- -CugUCCUGG-------------GGCCCCCG-AGuCG-GUCC- -5'
28883 5' -63.5 NC_006146.1 + 162035 0.69 0.417462
Target:  5'- --uGGGAgCCUGGGGGCggGGgCAGGc -3'
miRNA:   3'- cugUCCUgGGGCCCCCGagUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 71362 0.69 0.417462
Target:  5'- -----uGCCCCGGGGGCUCGGacuuCCAGc -3'
miRNA:   3'- cuguccUGGGGCCCCCGAGUC----GGUCc -5'
28883 5' -63.5 NC_006146.1 + 129385 0.69 0.425776
Target:  5'- cGC-GGAUCCCGGGcG-UCAGCCGGGc -3'
miRNA:   3'- cUGuCCUGGGGCCCcCgAGUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 921 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 1853 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 2785 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 3717 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 51643 0.69 0.442694
Target:  5'- aGGCucuGGACuCCCaGGGGGC-CAgggccgguGCCGGGa -3'
miRNA:   3'- -CUGu--CCUG-GGG-CCCCCGaGU--------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 42837 0.69 0.451295
Target:  5'- gGAuCAGGGCCUCGaGGGC-C-GCCAGGc -3'
miRNA:   3'- -CU-GUCCUGGGGCcCCCGaGuCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 62507 0.68 0.459986
Target:  5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3'
miRNA:   3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5'
28883 5' -63.5 NC_006146.1 + 76915 0.68 0.459986
Target:  5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3'
miRNA:   3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 52080 0.68 0.459986
Target:  5'- cGGgAGGGCUgcggUCGGGGGC-CGGCgAGGc -3'
miRNA:   3'- -CUgUCCUGG----GGCCCCCGaGUCGgUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.