miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 13854 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 14108 0.71 0.332903
Target:  5'- gGGCGGGAUgUCGGGGcuGCUggcggcggccuaCAGCCAGGu -3'
miRNA:   3'- -CUGUCCUGgGGCCCC--CGA------------GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 14676 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 14847 0.75 0.189414
Target:  5'- -cCGGGGCCgCGGGaGGCcgagggggCAGCCAGGg -3'
miRNA:   3'- cuGUCCUGGgGCCC-CCGa-------GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 16497 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 16932 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 17754 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 19575 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 20009 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 20190 0.73 0.250062
Target:  5'- --gAGGGcCCCCGGGGGCgcaggaGGCUGGGc -3'
miRNA:   3'- cugUCCU-GGGGCCCCCGag----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 20832 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 22653 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 23087 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 23910 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 24187 0.67 0.551187
Target:  5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3'
miRNA:   3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 25731 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 26141 0.71 0.330781
Target:  5'- -cCGGGGCCCggucggaaagagcaCGGGGGCUuaagCGGCCuGGa -3'
miRNA:   3'- cuGUCCUGGG--------------GCCCCCGA----GUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 26165 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 26987 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 28809 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.