Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28885 | 3' | -46.8 | NC_006146.1 | + | 9496 | 0.69 | 0.994292 |
Target: 5'- -gCCUGG-CACaGGCcUAUGAUCu -3' miRNA: 3'- agGGACCuGUGaCCG-AUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 14306 | 0.66 | 0.999427 |
Target: 5'- gUCCCUGGA-GCUGGCg------ -3' miRNA: 3'- -AGGGACCUgUGACCGauacuag -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 14559 | 0.68 | 0.996471 |
Target: 5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3' miRNA: 3'- aGGGACCUG-------UGaCC-GAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 17637 | 0.68 | 0.996471 |
Target: 5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3' miRNA: 3'- aGGGACCUG-------UGaCC-GAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 18384 | 0.69 | 0.994292 |
Target: 5'- gUCCUGGugGCcggGGUgGUGAUCc -3' miRNA: 3'- aGGGACCugUGa--CCGaUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 20715 | 0.68 | 0.996471 |
Target: 5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3' miRNA: 3'- aGGGACCUG-------UGaCC-GAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 23793 | 0.68 | 0.996471 |
Target: 5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3' miRNA: 3'- aGGGACCUG-------UGaCC-GAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 26871 | 0.68 | 0.996471 |
Target: 5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3' miRNA: 3'- aGGGACCUG-------UGaCC-GAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 29177 | 1.06 | 0.024505 |
Target: 5'- gUCCCUGGACACUGGCUAUGAUCc -3' miRNA: 3'- -AGGGACCUGUGACCGAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 40382 | 0.66 | 0.999282 |
Target: 5'- gCCC-GGAUugUGGCUGcUGAc- -3' miRNA: 3'- aGGGaCCUGugACCGAU-ACUag -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 40663 | 0.71 | 0.977651 |
Target: 5'- gUUCCUGGAgACUGGUgGUGggCu -3' miRNA: 3'- -AGGGACCUgUGACCGaUACuaG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 41354 | 0.67 | 0.998644 |
Target: 5'- gCCCaGGGC-CUGGCgGUGGUg -3' miRNA: 3'- aGGGaCCUGuGACCGaUACUAg -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 52924 | 0.66 | 0.999546 |
Target: 5'- cCCCggGGGCGCUGGCcuc-GUCc -3' miRNA: 3'- aGGGa-CCUGUGACCGauacUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 53719 | 0.67 | 0.999107 |
Target: 5'- cUCUCUGGcACAUgugguggaccaGGCUGUGAUUg -3' miRNA: 3'- -AGGGACC-UGUGa----------CCGAUACUAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 55663 | 0.66 | 0.999721 |
Target: 5'- aUCCCUGGGCcucucaGCUgGGCUcccuggGUGAcaUCa -3' miRNA: 3'- -AGGGACCUG------UGA-CCGA------UACU--AG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 57320 | 0.66 | 0.999282 |
Target: 5'- -aCCUGGACGCgUGGCUcucUGGg- -3' miRNA: 3'- agGGACCUGUG-ACCGAu--ACUag -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 58912 | 0.67 | 0.998344 |
Target: 5'- cUCUCUGGACcCUGGUguuUGUGGg- -3' miRNA: 3'- -AGGGACCUGuGACCG---AUACUag -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 60417 | 0.68 | 0.997092 |
Target: 5'- cUCCUGGAC-CUGGCcgggGUGGa- -3' miRNA: 3'- aGGGACCUGuGACCGa---UACUag -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 63369 | 0.66 | 0.999546 |
Target: 5'- cCCCUGGGCACgagUGuGCUGUuuAUCu -3' miRNA: 3'- aGGGACCUGUG---AC-CGAUAc-UAG- -5' |
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28885 | 3' | -46.8 | NC_006146.1 | + | 67192 | 0.67 | 0.998344 |
Target: 5'- cUCCUUGGGauucCACUGGCcGUGGc- -3' miRNA: 3'- -AGGGACCU----GUGACCGaUACUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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