miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28885 3' -46.8 NC_006146.1 + 40382 0.66 0.999282
Target:  5'- gCCC-GGAUugUGGCUGcUGAc- -3'
miRNA:   3'- aGGGaCCUGugACCGAU-ACUag -5'
28885 3' -46.8 NC_006146.1 + 23793 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 26871 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 115089 0.68 0.996531
Target:  5'- aCCCaGG-CGCUGGCUGUacUCa -3'
miRNA:   3'- aGGGaCCuGUGACCGAUAcuAG- -5'
28885 3' -46.8 NC_006146.1 + 67192 0.67 0.998344
Target:  5'- cUCCUUGGGauucCACUGGCcGUGGc- -3'
miRNA:   3'- -AGGGACCU----GUGACCGaUACUag -5'
28885 3' -46.8 NC_006146.1 + 41354 0.67 0.998644
Target:  5'- gCCCaGGGC-CUGGCgGUGGUg -3'
miRNA:   3'- aGGGaCCUGuGACCGaUACUAg -5'
28885 3' -46.8 NC_006146.1 + 87646 0.67 0.998896
Target:  5'- uUCUCUGGACAgUGGCa------ -3'
miRNA:   3'- -AGGGACCUGUgACCGauacuag -5'
28885 3' -46.8 NC_006146.1 + 57320 0.66 0.999282
Target:  5'- -aCCUGGACGCgUGGCUcucUGGg- -3'
miRNA:   3'- agGGACCUGUG-ACCGAu--ACUag -5'
28885 3' -46.8 NC_006146.1 + 84490 0.66 0.999282
Target:  5'- cCCCUaccGAUuCUGGCUGUGGUg -3'
miRNA:   3'- aGGGAc--CUGuGACCGAUACUAg -5'
28885 3' -46.8 NC_006146.1 + 20715 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 17637 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 14559 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 141691 0.78 0.759244
Target:  5'- aUCCUGGGCAUgGGCUAUGAa- -3'
miRNA:   3'- aGGGACCUGUGaCCGAUACUag -5'
28885 3' -46.8 NC_006146.1 + 86323 0.71 0.977651
Target:  5'- gCCCUGGGCAg-GGUcuUGAUCa -3'
miRNA:   3'- aGGGACCUGUgaCCGauACUAG- -5'
28885 3' -46.8 NC_006146.1 + 92541 0.7 0.982429
Target:  5'- cUCCCUGGGCAgcGGCUAcacccuggGGUCu -3'
miRNA:   3'- -AGGGACCUGUgaCCGAUa-------CUAG- -5'
28885 3' -46.8 NC_006146.1 + 137617 0.7 0.982429
Target:  5'- cCCCUGGGucCGCUGGUUcgGuUCa -3'
miRNA:   3'- aGGGACCU--GUGACCGAuaCuAG- -5'
28885 3' -46.8 NC_006146.1 + 157658 0.7 0.989634
Target:  5'- cCCCUGGAC-CaGGCUGauguagaacUGGUCu -3'
miRNA:   3'- aGGGACCUGuGaCCGAU---------ACUAG- -5'
28885 3' -46.8 NC_006146.1 + 123906 0.69 0.99101
Target:  5'- gCUCUGGACGCUGGUga-GAg- -3'
miRNA:   3'- aGGGACCUGUGACCGauaCUag -5'
28885 3' -46.8 NC_006146.1 + 9496 0.69 0.994292
Target:  5'- -gCCUGG-CACaGGCcUAUGAUCu -3'
miRNA:   3'- agGGACCuGUGaCCG-AUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 101115 0.68 0.995814
Target:  5'- cCCCaGGACACcuuccugUGGCagGUGGUCu -3'
miRNA:   3'- aGGGaCCUGUG-------ACCGa-UACUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.