miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 5' -56.4 NC_006146.1 + 142584 0.74 0.452172
Target:  5'- --cGGGCGGGGCCAGGGccuccagAGGCaccaGGCUCa -3'
miRNA:   3'- acaCCUGUCUUGGUUCC-------UCCG----CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 148739 0.74 0.452172
Target:  5'- --cGGGCGGGGCCAGGGccuccagAGGCaccaGGCUCa -3'
miRNA:   3'- acaCCUGUCUUGGUUCC-------UCCG----CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 151817 0.74 0.452172
Target:  5'- --cGGGCGGGGCCAGGGccuccagAGGCaccaGGCUCa -3'
miRNA:   3'- acaCCUGUCUUGGUUCC-------UCCG----CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 154895 0.74 0.452172
Target:  5'- --cGGGCGGGGCCAGGGccuccagAGGCaccaGGCUCa -3'
miRNA:   3'- acaCCUGUCUUGGUUCC-------UCCG----CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 157973 0.74 0.452172
Target:  5'- --cGGGCGGGGCCAGGGccuccagAGGCaccaGGCUCa -3'
miRNA:   3'- acaCCUGUCUUGGUUCC-------UCCG----CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 131006 0.74 0.453089
Target:  5'- cGUGGACAaucucaaaAGCCAGccGGAGGCGGCa- -3'
miRNA:   3'- aCACCUGUc-------UUGGUU--CCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 117249 0.74 0.453089
Target:  5'- --cGGcCGGGGCCAGGGGGGuCGGCa- -3'
miRNA:   3'- acaCCuGUCUUGGUUCCUCC-GCCGag -5'
28888 5' -56.4 NC_006146.1 + 39652 0.74 0.490577
Target:  5'- gGUGGGCuGAgacugccuugGCCuuGGAGGCGGCg- -3'
miRNA:   3'- aCACCUGuCU----------UGGuuCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 24184 0.73 0.515701
Target:  5'- cGUGGACAGGGCaGAGGAGGgcugggccugcgaGGUUCu -3'
miRNA:   3'- aCACCUGUCUUGgUUCCUCCg------------CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 153593 0.73 0.519614
Target:  5'- gUGUGGGC-GAGgUuuGGGGGCGGCUg -3'
miRNA:   3'- -ACACCUGuCUUgGuuCCUCCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 150515 0.73 0.519614
Target:  5'- gUGUGGGC-GAGgUuuGGGGGCGGCUg -3'
miRNA:   3'- -ACACCUGuCUUgGuuCCUCCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 147437 0.73 0.519614
Target:  5'- gUGUGGGC-GAGgUuuGGGGGCGGCUg -3'
miRNA:   3'- -ACACCUGuCUUgGuuCCUCCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 141281 0.73 0.519614
Target:  5'- gUGUGGGC-GAGgUuuGGGGGCGGCUg -3'
miRNA:   3'- -ACACCUGuCUUgGuuCCUCCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 144359 0.73 0.519614
Target:  5'- gUGUGGGC-GAGgUuuGGGGGCGGCUg -3'
miRNA:   3'- -ACACCUGuCUUgGuuCCUCCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 170525 0.73 0.539342
Target:  5'- --cGGGCGGGGCCugAGGGGGcGCGGCg- -3'
miRNA:   3'- acaCCUGUCUUGG--UUCCUC-CGCCGag -5'
28888 5' -56.4 NC_006146.1 + 147702 0.72 0.559318
Target:  5'- -aUGGcaACAGGGCCAGGaAGGCGGCg- -3'
miRNA:   3'- acACC--UGUCUUGGUUCcUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 34072 0.72 0.559318
Target:  5'- cGUGGcACGGGGCCGGGGgucccGGGgGGCa- -3'
miRNA:   3'- aCACC-UGUCUUGGUUCC-----UCCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 140086 0.72 0.589644
Target:  5'- gGUGGAgGGggUggaaGAGGGGGUGGCg- -3'
miRNA:   3'- aCACCUgUCuuGg---UUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 89975 0.71 0.610027
Target:  5'- gUGcUGGAgGGAACUcaaGAGGAGGUGGUg- -3'
miRNA:   3'- -AC-ACCUgUCUUGG---UUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 162002 0.71 0.640706
Target:  5'- gGUGGAUAGGcACCcuGGGAGacCGGCUCc -3'
miRNA:   3'- aCACCUGUCU-UGGu-UCCUCc-GCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.