miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 5' -56.4 NC_006146.1 + 28406 1.09 0.002735
Target:  5'- aUGUGGACAGAACCAAGGAGGCGGCUCc -3'
miRNA:   3'- -ACACCUGUCUUGGUUCCUCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 51170 0.87 0.080363
Target:  5'- aGUGGGCuguGGAGCCGGGGAGGCuGCUCg -3'
miRNA:   3'- aCACCUG---UCUUGGUUCCUCCGcCGAG- -5'
28888 5' -56.4 NC_006146.1 + 52066 0.81 0.18921
Target:  5'- uUGUGGGCaAGGauGCCAGGGAGGCGGgcaUCa -3'
miRNA:   3'- -ACACCUG-UCU--UGGUUCCUCCGCCg--AG- -5'
28888 5' -56.4 NC_006146.1 + 137905 0.8 0.219511
Target:  5'- cGUGGACAGGGCCGGGGGuuccGGgGGCa- -3'
miRNA:   3'- aCACCUGUCUUGGUUCCU----CCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 153831 0.8 0.230497
Target:  5'- aGUGGACGG-GCCuGGGAGGCuGGUUCu -3'
miRNA:   3'- aCACCUGUCuUGGuUCCUCCG-CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 150753 0.8 0.230497
Target:  5'- aGUGGACGG-GCCuGGGAGGCuGGUUCu -3'
miRNA:   3'- aCACCUGUCuUGGuUCCUCCG-CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 141520 0.8 0.230497
Target:  5'- aGUGGACGG-GCCuGGGAGGCuGGUUCu -3'
miRNA:   3'- aCACCUGUCuUGGuUCCUCCG-CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 144598 0.8 0.230497
Target:  5'- aGUGGACGG-GCCuGGGAGGCuGGUUCu -3'
miRNA:   3'- aCACCUGUCuUGGuUCCUCCG-CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 156909 0.8 0.230497
Target:  5'- aGUGGACGG-GCCuGGGAGGCuGGUUCu -3'
miRNA:   3'- aCACCUGUCuUGGuUCCUCCG-CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 147676 0.8 0.230497
Target:  5'- aGUGGACGG-GCCuGGGAGGCuGGUUCu -3'
miRNA:   3'- aCACCUGUCuUGGuUCCUCCG-CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 147902 0.78 0.272629
Target:  5'- --aGGACAG-GCCAGGGgagagguaAGGCGGCUCu -3'
miRNA:   3'- acaCCUGUCuUGGUUCC--------UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 150980 0.78 0.272629
Target:  5'- --aGGACAG-GCCAGGGgagagguaAGGCGGCUCu -3'
miRNA:   3'- acaCCUGUCuUGGUUCC--------UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 90059 0.78 0.272629
Target:  5'- gUGcUGGAgGGAGCCuAGGAGGCGGUg- -3'
miRNA:   3'- -AC-ACCUgUCUUGGuUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 141746 0.78 0.272629
Target:  5'- --aGGACAG-GCCAGGGgagagguaAGGCGGCUCu -3'
miRNA:   3'- acaCCUGUCuUGGUUCC--------UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 157136 0.78 0.272629
Target:  5'- --aGGACAG-GCCAGGGgagagguaAGGCGGCUCu -3'
miRNA:   3'- acaCCUGUCuUGGUUCC--------UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 144824 0.78 0.272629
Target:  5'- --aGGACAG-GCCAGGGgagagguaAGGCGGCUCu -3'
miRNA:   3'- acaCCUGUCuUGGUUCC--------UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 154058 0.78 0.272629
Target:  5'- --aGGACAG-GCCAGGGgagagguaAGGCGGCUCu -3'
miRNA:   3'- acaCCUGUCuUGGUUCC--------UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 140870 0.77 0.343203
Target:  5'- aGUGGA---AGCCgAGGGAGGUGGCUCu -3'
miRNA:   3'- aCACCUgucUUGG-UUCCUCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 51719 0.75 0.426022
Target:  5'- gGUGGugGaGGACaUggGGAGGCGGCg- -3'
miRNA:   3'- aCACCugU-CUUG-GuuCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 145662 0.74 0.452172
Target:  5'- --cGGGCGGGGCCAGGGccuccagAGGCaccaGGCUCa -3'
miRNA:   3'- acaCCUGUCUUGGUUCC-------UCCG----CCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.