miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 5' -56.4 NC_006146.1 + 51170 0.87 0.080363
Target:  5'- aGUGGGCuguGGAGCCGGGGAGGCuGCUCg -3'
miRNA:   3'- aCACCUG---UCUUGGUUCCUCCGcCGAG- -5'
28888 5' -56.4 NC_006146.1 + 38393 0.71 0.65093
Target:  5'- cUGUGGuGCGGAugCAugGGGuGGUGGCa- -3'
miRNA:   3'- -ACACC-UGUCUugGU--UCCuCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 168331 0.71 0.661138
Target:  5'- --aGGGCGGGGCCGGGGccuGGCGGg-- -3'
miRNA:   3'- acaCCUGUCUUGGUUCCu--CCGCCgag -5'
28888 5' -56.4 NC_006146.1 + 105643 0.66 0.905355
Target:  5'- cUGUGGuaGCAGGcugagcuguuuuGCCAuuuuauucAGGCGGCUCa -3'
miRNA:   3'- -ACACC--UGUCU------------UGGUucc-----UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 51719 0.75 0.426022
Target:  5'- gGUGGugGaGGACaUggGGAGGCGGCg- -3'
miRNA:   3'- aCACCugU-CUUG-GuuCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 117249 0.74 0.453089
Target:  5'- --cGGcCGGGGCCAGGGGGGuCGGCa- -3'
miRNA:   3'- acaCCuGUCUUGGUUCCUCC-GCCGag -5'
28888 5' -56.4 NC_006146.1 + 34072 0.72 0.559318
Target:  5'- cGUGGcACGGGGCCGGGGgucccGGGgGGCa- -3'
miRNA:   3'- aCACC-UGUCUUGGUUCC-----UCCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 147702 0.72 0.559318
Target:  5'- -aUGGcaACAGGGCCAGGaAGGCGGCg- -3'
miRNA:   3'- acACC--UGUCUUGGUUCcUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 12809 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 28199 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 18965 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 162002 0.71 0.640706
Target:  5'- gGUGGAUAGGcACCcuGGGAGacCGGCUCc -3'
miRNA:   3'- aCACCUGUCU-UGGu-UCCUCc-GCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 137905 0.8 0.219511
Target:  5'- cGUGGACAGGGCCGGGGGuuccGGgGGCa- -3'
miRNA:   3'- aCACCUGUCUUGGUUCCU----CCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 22043 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 90059 0.78 0.272629
Target:  5'- gUGcUGGAgGGAGCCuAGGAGGCGGUg- -3'
miRNA:   3'- -AC-ACCUgUCUUGGuUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 89975 0.71 0.610027
Target:  5'- gUGcUGGAgGGAACUcaaGAGGAGGUGGUg- -3'
miRNA:   3'- -AC-ACCUgUCUUGG---UUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 25121 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 167399 0.71 0.661138
Target:  5'- --aGGGCGGGGCCGGGGccuGGCGGg-- -3'
miRNA:   3'- acaCCUGUCUUGGUUCCu--CCGCCgag -5'
28888 5' -56.4 NC_006146.1 + 140870 0.77 0.343203
Target:  5'- aGUGGA---AGCCgAGGGAGGUGGCUCu -3'
miRNA:   3'- aCACCUgucUUGG-UUCCUCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 170525 0.73 0.539342
Target:  5'- --cGGGCGGGGCCugAGGGGGcGCGGCg- -3'
miRNA:   3'- acaCCUGUCUUGG--UUCCUC-CGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.