miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 5' -56.4 NC_006146.1 + 8735 0.69 0.745112
Target:  5'- cGUGGAUAGccuauGCUAucuacagggucagauGGGAGGUGGuCUCu -3'
miRNA:   3'- aCACCUGUCu----UGGU---------------UCCUCCGCC-GAG- -5'
28888 5' -56.4 NC_006146.1 + 11428 0.69 0.769944
Target:  5'- --aGGAcCAGGccaaggugGCCAAGGuGGCGGCccUCa -3'
miRNA:   3'- acaCCU-GUCU--------UGGUUCCuCCGCCG--AG- -5'
28888 5' -56.4 NC_006146.1 + 12809 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 14187 0.71 0.65093
Target:  5'- -cUGGACccccGGAGCCuggacGGGGAGGCGGUg- -3'
miRNA:   3'- acACCUG----UCUUGG-----UUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 15041 0.67 0.856378
Target:  5'- -cUGGcCAGGGCCcgccgggccugcGAGGAGGCacuggcgggGGCUCc -3'
miRNA:   3'- acACCuGUCUUGG------------UUCCUCCG---------CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 15109 0.69 0.769944
Target:  5'- gGUGGccccCAGGGCCAccGA-GCGGCUCu -3'
miRNA:   3'- aCACCu---GUCUUGGUucCUcCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 15888 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 18965 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 21280 0.69 0.760483
Target:  5'- gGUGcuGGCGGAcGCCcggguaAAGGAGGCGGC-Ca -3'
miRNA:   3'- aCAC--CUGUCU-UGG------UUCCUCCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 22043 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 23974 0.66 0.878692
Target:  5'- gGUGGG-GGAGCCGGaGAGGgGGCg- -3'
miRNA:   3'- aCACCUgUCUUGGUUcCUCCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 24184 0.73 0.515701
Target:  5'- cGUGGACAGGGCaGAGGAGGgcugggccugcgaGGUUCu -3'
miRNA:   3'- aCACCUGUCUUGgUUCCUCCg------------CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 24367 0.7 0.671323
Target:  5'- aGUGGcGCAGGGCCAgcuccAGGGcGCGGCg- -3'
miRNA:   3'- aCACC-UGUCUUGGU-----UCCUcCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 25121 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 26180 0.67 0.832242
Target:  5'- -cUGGAgGGGAUUaggucgGAGGGGGCGGCc- -3'
miRNA:   3'- acACCUgUCUUGG------UUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 28199 0.71 0.648886
Target:  5'- aGUGGACAGAGaCAGGGuuagagcccuccGGCGGC-Cg -3'
miRNA:   3'- aCACCUGUCUUgGUUCCu-----------CCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 28406 1.09 0.002735
Target:  5'- aUGUGGACAGAACCAAGGAGGCGGCUCc -3'
miRNA:   3'- -ACACCUGUCUUGGUUCCUCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 29585 0.69 0.740255
Target:  5'- cUG-GGACAGGACCccGGGGGCucagccaGGCUg -3'
miRNA:   3'- -ACaCCUGUCUUGGuuCCUCCG-------CCGAg -5'
28888 5' -56.4 NC_006146.1 + 34072 0.72 0.559318
Target:  5'- cGUGGcACGGGGCCGGGGgucccGGGgGGCa- -3'
miRNA:   3'- aCACC-UGUCUUGGUUCC-----UCCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 38393 0.71 0.65093
Target:  5'- cUGUGGuGCGGAugCAugGGGuGGUGGCa- -3'
miRNA:   3'- -ACACC-UGUCUugGU--UCCuCCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.