Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28888 | 5' | -56.4 | NC_006146.1 | + | 92053 | 0.65 | 0.909036 |
Target: 5'- cUGggGGGCGGGcccgGCCuggggcugcugcuGGGGGGCGGCcCg -3' miRNA: 3'- -ACa-CCUGUCU----UGGu------------UCCUCCGCCGaG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 120514 | 0.66 | 0.885698 |
Target: 5'- --aGGACGcGAGCCGcguGGAugcGGCGGCg- -3' miRNA: 3'- acaCCUGU-CUUGGUu--CCU---CCGCCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 115371 | 0.66 | 0.885698 |
Target: 5'- cGUGGcgGCGGAGCU--GGAGGCccuggccGCUCg -3' miRNA: 3'- aCACC--UGUCUUGGuuCCUCCGc------CGAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 42760 | 0.66 | 0.885698 |
Target: 5'- --cGGcaGCAGGGCCGacAGGugcAGGCGGCg- -3' miRNA: 3'- acaCC--UGUCUUGGU--UCC---UCCGCCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 100002 | 0.66 | 0.885007 |
Target: 5'- --gGGAUcgGGAGCgGgcacgucGGGAGGCGGCg- -3' miRNA: 3'- acaCCUG--UCUUGgU-------UCCUCCGCCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 23974 | 0.66 | 0.878692 |
Target: 5'- gGUGGG-GGAGCCGGaGAGGgGGCg- -3' miRNA: 3'- aCACCUgUCUUGGUUcCUCCgCCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 122608 | 0.66 | 0.878692 |
Target: 5'- gGUGGAgggcgaGGGGCgGAGGAGGCcggGGCc- -3' miRNA: 3'- aCACCUg-----UCUUGgUUCCUCCG---CCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 101869 | 0.66 | 0.878692 |
Target: 5'- gGUGG-CGGGG-CGAGGAcGGUGGCg- -3' miRNA: 3'- aCACCuGUCUUgGUUCCU-CCGCCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 77295 | 0.66 | 0.878692 |
Target: 5'- --aGGACAGcAGCCccAGGAgcccGGCGGgUCg -3' miRNA: 3'- acaCCUGUC-UUGGu-UCCU----CCGCCgAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 41414 | 0.66 | 0.892479 |
Target: 5'- cGUaGACGGccgcGCUggGuGGGCGGCUCu -3' miRNA: 3'- aCAcCUGUCu---UGGuuCcUCCGCCGAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 43632 | 0.66 | 0.892479 |
Target: 5'- aGUGGGCGGcggggcguGGCCGccugGGGAGaggggccCGGCUCg -3' miRNA: 3'- aCACCUGUC--------UUGGU----UCCUCc------GCCGAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 61866 | 0.66 | 0.892479 |
Target: 5'- --gGGGCAGAGguuCCAcGGGGGCGcGCccUCg -3' miRNA: 3'- acaCCUGUCUU---GGUuCCUCCGC-CG--AG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 105643 | 0.66 | 0.905355 |
Target: 5'- cUGUGGuaGCAGGcugagcuguuuuGCCAuuuuauucAGGCGGCUCa -3' miRNA: 3'- -ACACC--UGUCU------------UGGUucc-----UCCGCCGAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 162418 | 0.66 | 0.905355 |
Target: 5'- gGUGGGCAcGGGCUAGGGGuGuCaGCUCa -3' miRNA: 3'- aCACCUGU-CUUGGUUCCUcC-GcCGAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 160335 | 0.66 | 0.899033 |
Target: 5'- cGUGGGgAG-ACCAcAGGAagguacuugGGCGGgUCa -3' miRNA: 3'- aCACCUgUCuUGGU-UCCU---------CCGCCgAG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 42278 | 0.66 | 0.899033 |
Target: 5'- -cUGGGCGacACCGGGGAGGCcaGGUa- -3' miRNA: 3'- acACCUGUcuUGGUUCCUCCG--CCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 157681 | 0.66 | 0.899033 |
Target: 5'- --aGGGCAGAGCCAGcca-GCGGCUg -3' miRNA: 3'- acaCCUGUCUUGGUUccucCGCCGAg -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 48585 | 0.66 | 0.899033 |
Target: 5'- -cUGGcACaAGAGCCAGacgauGGGGGUGGCa- -3' miRNA: 3'- acACC-UG-UCUUGGUU-----CCUCCGCCGag -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 115684 | 0.66 | 0.892479 |
Target: 5'- --aGGGCGGAGgCA--GAGGCGGC-Cg -3' miRNA: 3'- acaCCUGUCUUgGUucCUCCGCCGaG- -5' |
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28888 | 5' | -56.4 | NC_006146.1 | + | 78003 | 0.66 | 0.892479 |
Target: 5'- -cUGGACAGcACgGGGGGuGGUGGCc- -3' miRNA: 3'- acACCUGUCuUGgUUCCU-CCGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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