miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28889 5' -50.3 NC_006146.1 + 28014 1.06 0.013856
Target:  5'- cAUCAAGCGCACCAGACCGUCCGAc -3'
miRNA:   3'- -UAGUUCGCGUGGUCUGGCAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 28206 1.06 0.013856
Target:  5'- cAUCAAGCGCACCAGACCGUCCGAc -3'
miRNA:   3'- -UAGUUCGCGUGGUCUGGCAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 122688 0.8 0.441299
Target:  5'- -cCAGGCGCGCCAGGCCcUCCa- -3'
miRNA:   3'- uaGUUCGCGUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 33087 0.8 0.470476
Target:  5'- -cCAGGUGCACCGGACCGgcggacccCCGAa -3'
miRNA:   3'- uaGUUCGCGUGGUCUGGCa-------GGCU- -5'
28889 5' -50.3 NC_006146.1 + 50304 0.78 0.584518
Target:  5'- uGUCAGGCGcCGCCGGGCCuuGUCCa- -3'
miRNA:   3'- -UAGUUCGC-GUGGUCUGG--CAGGcu -5'
28889 5' -50.3 NC_006146.1 + 71685 0.76 0.692184
Target:  5'- gGUCGGGCGCGCCgAGGCCGcggCCu- -3'
miRNA:   3'- -UAGUUCGCGUGG-UCUGGCa--GGcu -5'
28889 5' -50.3 NC_006146.1 + 170606 0.75 0.702809
Target:  5'- -gCGAGCGCGCCGGGCCcgcccCCGGg -3'
miRNA:   3'- uaGUUCGCGUGGUCUGGca---GGCU- -5'
28889 5' -50.3 NC_006146.1 + 158088 0.75 0.702809
Target:  5'- -aCAuGCGCACCGGcagccGCCGUCCGu -3'
miRNA:   3'- uaGUuCGCGUGGUC-----UGGCAGGCu -5'
28889 5' -50.3 NC_006146.1 + 19873 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 13717 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 16795 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 29106 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 26028 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 170682 0.72 0.864581
Target:  5'- -cCAGGgGCGCCccggGGACCGUCgCGGg -3'
miRNA:   3'- uaGUUCgCGUGG----UCUGGCAG-GCU- -5'
28889 5' -50.3 NC_006146.1 + 56548 0.71 0.90789
Target:  5'- cGUCAcGCGgGCCAGGCCcccGUCCa- -3'
miRNA:   3'- -UAGUuCGCgUGGUCUGG---CAGGcu -5'
28889 5' -50.3 NC_006146.1 + 53612 0.71 0.90789
Target:  5'- --aGGGCGCggcACCGGGCCGUgcaCCGAc -3'
miRNA:   3'- uagUUCGCG---UGGUCUGGCA---GGCU- -5'
28889 5' -50.3 NC_006146.1 + 157009 0.71 0.914212
Target:  5'- aGUCAcGCGCgGCCucGGCCGUCCa- -3'
miRNA:   3'- -UAGUuCGCG-UGGu-CUGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 137460 0.7 0.931584
Target:  5'- uUCAGGUGCACCcggagccccaGGACCGagCGGc -3'
miRNA:   3'- uAGUUCGCGUGG----------UCUGGCagGCU- -5'
28889 5' -50.3 NC_006146.1 + 120012 0.7 0.936842
Target:  5'- -cCAGGcCGCACCcgcGGCCaGUCCGGg -3'
miRNA:   3'- uaGUUC-GCGUGGu--CUGG-CAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 136917 0.7 0.941835
Target:  5'- -cCAGGUGCACCGGACCaG-CgGAc -3'
miRNA:   3'- uaGUUCGCGUGGUCUGG-CaGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.