miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28889 5' -50.3 NC_006146.1 + 934 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 1866 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 2798 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 3730 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 13717 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 13832 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 15010 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 16795 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 16910 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 18088 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 18837 0.66 0.994864
Target:  5'- -cCAAGUGCuuCCAGACC--CCGGg -3'
miRNA:   3'- uaGUUCGCGu-GGUCUGGcaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 19873 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 19987 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 20783 0.69 0.946564
Target:  5'- cAUCAAGUGCACguGcaacGCCGUCUa- -3'
miRNA:   3'- -UAGUUCGCGUGguC----UGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 21166 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 22949 0.66 0.990786
Target:  5'- cUCucGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGu-UCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 23065 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 24244 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 26028 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 26143 0.66 0.994017
Target:  5'- -cCGGGUcCAUCAGGCCGgCCGGa -3'
miRNA:   3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.