miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28889 5' -50.3 NC_006146.1 + 24244 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 57985 0.69 0.951033
Target:  5'- -cCAGGCGCACCAGgacgaGCUGgaggcCCGGg -3'
miRNA:   3'- uaGUUCGCGUGGUC-----UGGCa----GGCU- -5'
28889 5' -50.3 NC_006146.1 + 56796 0.69 0.962915
Target:  5'- --uGAGCGCGgCGG-CCGUCUGGc -3'
miRNA:   3'- uagUUCGCGUgGUCuGGCAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 130821 0.68 0.966384
Target:  5'- -gCAcGCGCugCAGGCCcUCCGc -3'
miRNA:   3'- uaGUuCGCGugGUCUGGcAGGCu -5'
28889 5' -50.3 NC_006146.1 + 68550 0.68 0.969618
Target:  5'- uUUGAGUGC-CCGGACCGcuggcgagCCGAg -3'
miRNA:   3'- uAGUUCGCGuGGUCUGGCa-------GGCU- -5'
28889 5' -50.3 NC_006146.1 + 154549 0.68 0.972333
Target:  5'- cUCcuGCGUGCCGGACgagggacauuggaUGUCCGAg -3'
miRNA:   3'- uAGuuCGCGUGGUCUG-------------GCAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 15010 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 18088 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 21166 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 120012 0.7 0.936842
Target:  5'- -cCAGGcCGCACCcgcGGCCaGUCCGGg -3'
miRNA:   3'- uaGUUC-GCGUGGu--CUGG-CAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 157009 0.71 0.914212
Target:  5'- aGUCAcGCGCgGCCucGGCCGUCCa- -3'
miRNA:   3'- -UAGUuCGCG-UGGu-CUGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 56548 0.71 0.90789
Target:  5'- cGUCAcGCGgGCCAGGCCcccGUCCa- -3'
miRNA:   3'- -UAGUuCGCgUGGUCUGG---CAGGcu -5'
28889 5' -50.3 NC_006146.1 + 158088 0.75 0.702809
Target:  5'- -aCAuGCGCACCGGcagccGCCGUCCGu -3'
miRNA:   3'- uaGUuCGCGUGGUC-----UGGCAGGCu -5'
28889 5' -50.3 NC_006146.1 + 170606 0.75 0.702809
Target:  5'- -gCGAGCGCGCCGGGCCcgcccCCGGg -3'
miRNA:   3'- uaGUUCGCGUGGUCUGGca---GGCU- -5'
28889 5' -50.3 NC_006146.1 + 13717 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 16795 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 19873 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 26028 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 29106 0.74 0.764788
Target:  5'- cUCGGGUcCACCAGGCCGgCCGGa -3'
miRNA:   3'- uAGUUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 170682 0.72 0.864581
Target:  5'- -cCAGGgGCGCCccggGGACCGUCgCGGg -3'
miRNA:   3'- uaGUUCgCGUGG----UCUGGCAG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.