miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2889 5' -48.7 NC_001493.1 + 107348 0.66 0.998619
Target:  5'- gUGAugcucUGGACGACGAUgGGGAGCUc--- -3'
miRNA:   3'- -ACU-----ACUUGCUGUUGgUCUUCGGcaac -5'
2889 5' -48.7 NC_001493.1 + 64950 0.66 0.998619
Target:  5'- cGAcGAgcGCGAUAACCGGGGugcGCCGcgUGa -3'
miRNA:   3'- aCUaCU--UGCUGUUGGUCUU---CGGCa-AC- -5'
2889 5' -48.7 NC_001493.1 + 30793 0.66 0.998619
Target:  5'- ---aGAACGACAuCCuGAacaaGGCCGUa- -3'
miRNA:   3'- acuaCUUGCUGUuGGuCU----UCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 19212 0.66 0.997984
Target:  5'- cGA-GAACcgUAACCAGggGCUGUg- -3'
miRNA:   3'- aCUaCUUGcuGUUGGUCuuCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 102260 0.66 0.997984
Target:  5'- cGAUGcauguGCGGCAACCAauccCCGUUGu -3'
miRNA:   3'- aCUACu----UGCUGUUGGUcuucGGCAAC- -5'
2889 5' -48.7 NC_001493.1 + 73539 0.66 0.997984
Target:  5'- gGggGAACGACGGCagucgggaCGGGAGCCu--- -3'
miRNA:   3'- aCuaCUUGCUGUUG--------GUCUUCGGcaac -5'
2889 5' -48.7 NC_001493.1 + 52856 0.66 0.997584
Target:  5'- gUGAUGGACu-CGGCCAGGaaagGGUCGUc- -3'
miRNA:   3'- -ACUACUUGcuGUUGGUCU----UCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 5003 0.66 0.997584
Target:  5'- cGAUGAggGCGACGacacuaugcccACgGGAAGCUGg-- -3'
miRNA:   3'- aCUACU--UGCUGU-----------UGgUCUUCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 120558 0.66 0.997584
Target:  5'- cGAUGAggGCGACGacacuaugcccACgGGAAGCUGg-- -3'
miRNA:   3'- aCUACU--UGCUGU-----------UGgUCUUCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 117488 0.66 0.99712
Target:  5'- aGAUGGACGGggucaUGACCGGGcGGUCGUUc -3'
miRNA:   3'- aCUACUUGCU-----GUUGGUCU-UCGGCAAc -5'
2889 5' -48.7 NC_001493.1 + 1934 0.66 0.99712
Target:  5'- aGAUGGACGGggucaUGACCGGGcGGUCGUUc -3'
miRNA:   3'- aCUACUUGCU-----GUUGGUCU-UCGGCAAc -5'
2889 5' -48.7 NC_001493.1 + 38592 0.67 0.996584
Target:  5'- cGAUGGuCG-CGACCAGAcAGCUGg-- -3'
miRNA:   3'- aCUACUuGCuGUUGGUCU-UCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 100949 0.67 0.996584
Target:  5'- ---gGAACGACAcuguguguGCCAGGggggauaacGGCCGUg- -3'
miRNA:   3'- acuaCUUGCUGU--------UGGUCU---------UCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 91714 0.67 0.995266
Target:  5'- cUGGUGAAgGACccAAUCGGggGCCc--- -3'
miRNA:   3'- -ACUACUUgCUG--UUGGUCuuCGGcaac -5'
2889 5' -48.7 NC_001493.1 + 129781 0.67 0.995266
Target:  5'- cGAcUGAGCGACG--CGGggGCCGc-- -3'
miRNA:   3'- aCU-ACUUGCUGUugGUCuuCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 50434 0.67 0.995266
Target:  5'- aGAUGcccACGACcgcacaccaucGGCCAGuGGUCGUUGa -3'
miRNA:   3'- aCUACu--UGCUG-----------UUGGUCuUCGGCAAC- -5'
2889 5' -48.7 NC_001493.1 + 14227 0.67 0.995266
Target:  5'- cGAcUGAGCGACG--CGGggGCCGc-- -3'
miRNA:   3'- aCU-ACUUGCUGUugGUCuuCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 105734 0.67 0.995266
Target:  5'- aGAcGGACGAUggAACCcuccuGGggGCCGUg- -3'
miRNA:   3'- aCUaCUUGCUG--UUGG-----UCuuCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 11168 0.67 0.994798
Target:  5'- aGgcGGACGAUcuGACCAGAccaccacugggccacGGCCGUc- -3'
miRNA:   3'- aCuaCUUGCUG--UUGGUCU---------------UCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 38514 0.67 0.994466
Target:  5'- aGGUGGAU-AgAACCGGGAGCUGUc- -3'
miRNA:   3'- aCUACUUGcUgUUGGUCUUCGGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.