Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2889 | 5' | -48.7 | NC_001493.1 | + | 130111 | 1.1 | 0.010347 |
Target: 5'- aUGAUGAACGACAACCAGAAGCCGUUGa -3' miRNA: 3'- -ACUACUUGCUGUUGGUCUUCGGCAAC- -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 129781 | 0.67 | 0.995266 |
Target: 5'- cGAcUGAGCGACG--CGGggGCCGc-- -3' miRNA: 3'- aCU-ACUUGCUGUugGUCuuCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 126723 | 0.67 | 0.994206 |
Target: 5'- aGgcGGACGAUcuGACCAGAccacacugggccacGGCCGUc- -3' miRNA: 3'- aCuaCUUGCUG--UUGGUCU--------------UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 120558 | 0.66 | 0.997584 |
Target: 5'- cGAUGAggGCGACGacacuaugcccACgGGAAGCUGg-- -3' miRNA: 3'- aCUACU--UGCUGU-----------UGgUCUUCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 118935 | 0.73 | 0.909989 |
Target: 5'- cGAccUGGGCGACAugauggACCAGAGcGCCGgggUGg -3' miRNA: 3'- aCU--ACUUGCUGU------UGGUCUU-CGGCa--AC- -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 118468 | 0.67 | 0.993561 |
Target: 5'- gGGUG-GCGGCGuauuuACC-GAGGCCGUUa -3' miRNA: 3'- aCUACuUGCUGU-----UGGuCUUCGGCAAc -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 117488 | 0.66 | 0.99712 |
Target: 5'- aGAUGGACGGggucaUGACCGGGcGGUCGUUc -3' miRNA: 3'- aCUACUUGCU-----GUUGGUCU-UCGGCAAc -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 107348 | 0.66 | 0.998619 |
Target: 5'- gUGAugcucUGGACGACGAUgGGGAGCUc--- -3' miRNA: 3'- -ACU-----ACUUGCUGUUGgUCUUCGGcaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 105734 | 0.67 | 0.995266 |
Target: 5'- aGAcGGACGAUggAACCcuccuGGggGCCGUg- -3' miRNA: 3'- aCUaCUUGCUG--UUGG-----UCuuCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 102260 | 0.66 | 0.997984 |
Target: 5'- cGAUGcauguGCGGCAACCAauccCCGUUGu -3' miRNA: 3'- aCUACu----UGCUGUUGGUcuucGGCAAC- -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 100949 | 0.67 | 0.996584 |
Target: 5'- ---gGAACGACAcuguguguGCCAGGggggauaacGGCCGUg- -3' miRNA: 3'- acuaCUUGCUGU--------UGGUCU---------UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 100478 | 0.67 | 0.993561 |
Target: 5'- uUGAaGAaccGCGACAACCccGggGCCGc-- -3' miRNA: 3'- -ACUaCU---UGCUGUUGGu-CuuCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 91714 | 0.67 | 0.995266 |
Target: 5'- cUGGUGAAgGACccAAUCGGggGCCc--- -3' miRNA: 3'- -ACUACUUgCUG--UUGGUCuuCGGcaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 89268 | 0.76 | 0.786637 |
Target: 5'- ---cGAGCGugGACCAGAAGgCGUa- -3' miRNA: 3'- acuaCUUGCugUUGGUCUUCgGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 83602 | 0.7 | 0.967751 |
Target: 5'- cUGAUGGACGACu-CCAuGAGCCa--- -3' miRNA: 3'- -ACUACUUGCUGuuGGUcUUCGGcaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 73539 | 0.66 | 0.997984 |
Target: 5'- gGggGAACGACGGCagucgggaCGGGAGCCu--- -3' miRNA: 3'- aCuaCUUGCUGUUG--------GUCUUCGGcaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 64950 | 0.66 | 0.998619 |
Target: 5'- cGAcGAgcGCGAUAACCGGGGugcGCCGcgUGa -3' miRNA: 3'- aCUaCU--UGCUGUUGGUCUU---CGGCa-AC- -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 61736 | 0.68 | 0.990116 |
Target: 5'- -cGUGAGCGACucgGACgAGGAGCCa--- -3' miRNA: 3'- acUACUUGCUG---UUGgUCUUCGGcaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 52856 | 0.66 | 0.997584 |
Target: 5'- gUGAUGGACu-CGGCCAGGaaagGGUCGUc- -3' miRNA: 3'- -ACUACUUGcuGUUGGUCU----UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 50434 | 0.67 | 0.995266 |
Target: 5'- aGAUGcccACGACcgcacaccaucGGCCAGuGGUCGUUGa -3' miRNA: 3'- aCUACu--UGCUG-----------UUGGUCuUCGGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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