miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 27157 1.12 0.014189
Target:  5'- cUGACAGCCGACCUUCGAAAACGAAACa -3'
miRNA:   3'- -ACUGUCGGCUGGAAGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 10302 0.83 0.576095
Target:  5'- aGGCGGCCGACC-UCGggGGC-AAGCa -3'
miRNA:   3'- aCUGUCGGCUGGaAGCuuUUGcUUUG- -5'
28894 3' -47.7 NC_006146.1 + 42411 0.8 0.693952
Target:  5'- cGAC-GCCGuCC-UCGAAGGCGAGACg -3'
miRNA:   3'- aCUGuCGGCuGGaAGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 45589 0.77 0.823042
Target:  5'- aGGCGGCCuGCCUcgCGAAGACGGAc- -3'
miRNA:   3'- aCUGUCGGcUGGAa-GCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 75809 0.75 0.908298
Target:  5'- gGGC-GCCG-CCUUCGAGGcccuGCGGGACa -3'
miRNA:   3'- aCUGuCGGCuGGAAGCUUU----UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 18649 0.75 0.922925
Target:  5'- aGGCAGCCagggaucgcaugcccGGCCUUCGcAGGCGAcGCu -3'
miRNA:   3'- aCUGUCGG---------------CUGGAAGCuUUUGCUuUG- -5'
28894 3' -47.7 NC_006146.1 + 51619 0.74 0.942017
Target:  5'- gGACAGCCGGCUgaggUUGAGGGacggugacuacCGGAGCa -3'
miRNA:   3'- aCUGUCGGCUGGa---AGCUUUU-----------GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 143705 0.74 0.946716
Target:  5'- cUGGCA-CCGuCCUUUGAGGuACGAAACa -3'
miRNA:   3'- -ACUGUcGGCuGGAAGCUUU-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 45821 0.74 0.946716
Target:  5'- -cACGGCCG-CC-UCGAAGACGGAGa -3'
miRNA:   3'- acUGUCGGCuGGaAGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 11519 0.73 0.959282
Target:  5'- gGACAGCgCGGCCUgCGAGcuGGCGGucAGCu -3'
miRNA:   3'- aCUGUCG-GCUGGAaGCUU--UUGCU--UUG- -5'
28894 3' -47.7 NC_006146.1 + 46066 0.73 0.962614
Target:  5'- cGAguGCCauagcugcugcagGGCC-UCGggGGCGAAGCa -3'
miRNA:   3'- aCUguCGG-------------CUGGaAGCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 1501 0.73 0.962972
Target:  5'- aUGGCAGCCGGCCU-CGuuuGggUGguGCu -3'
miRNA:   3'- -ACUGUCGGCUGGAaGCu--UuuGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 85591 0.73 0.966089
Target:  5'- aGGCAGCCGcCCgccUCGGAAGCuggcaccGggGCa -3'
miRNA:   3'- aCUGUCGGCuGGa--AGCUUUUG-------CuuUG- -5'
28894 3' -47.7 NC_006146.1 + 144687 0.72 0.977967
Target:  5'- aGGCGGgCGcCCUUgccUGGAGGCGAGACu -3'
miRNA:   3'- aCUGUCgGCuGGAA---GCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 55474 0.72 0.980326
Target:  5'- cGAUGGCCG-CgggCGAGAACGAGGCc -3'
miRNA:   3'- aCUGUCGGCuGgaaGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 150489 0.71 0.982492
Target:  5'- cUGGUAGCCGuCCcugUCGGAGGCGGAGg -3'
miRNA:   3'- -ACUGUCGGCuGGa--AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 138130 0.71 0.982492
Target:  5'- aGGCAGCCGGCU----GGAugGggGCa -3'
miRNA:   3'- aCUGUCGGCUGGaagcUUUugCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 94646 0.71 0.984473
Target:  5'- aUGAUGGCCGcCCUggGGAccACGAAGCg -3'
miRNA:   3'- -ACUGUCGGCuGGAagCUUu-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 20577 0.71 0.986279
Target:  5'- aGACuAGCCGGCCUgCGcccGGGCGAGGa -3'
miRNA:   3'- aCUG-UCGGCUGGAaGCu--UUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 68875 0.71 0.986279
Target:  5'- cGACAGCCuGGCCcugaUgGAGAugGAGAa -3'
miRNA:   3'- aCUGUCGG-CUGGa---AgCUUUugCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.