miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 45589 0.77 0.823042
Target:  5'- aGGCGGCCuGCCUcgCGAAGACGGAc- -3'
miRNA:   3'- aCUGUCGGcUGGAa-GCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 67043 0.7 0.994822
Target:  5'- cGACAGUCGGCCgggaCGGAGACc---- -3'
miRNA:   3'- aCUGUCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 52500 0.69 0.996805
Target:  5'- cGACGGCCGAguuggagaUCUgggcgggaaaGAGGACGAGGCc -3'
miRNA:   3'- aCUGUCGGCU--------GGAag--------CUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 130107 0.66 0.999896
Target:  5'- uUGAC-GCCGGCUUUCucaGAAaccgcGugGAGACc -3'
miRNA:   3'- -ACUGuCGGCUGGAAG---CUU-----UugCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 46066 0.73 0.962614
Target:  5'- cGAguGCCauagcugcugcagGGCC-UCGggGGCGAAGCa -3'
miRNA:   3'- aCUguCGG-------------CUGGaAGCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 1501 0.73 0.962972
Target:  5'- aUGGCAGCCGGCCU-CGuuuGggUGguGCu -3'
miRNA:   3'- -ACUGUCGGCUGGAaGCu--UuuGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 55474 0.72 0.980326
Target:  5'- cGAUGGCCG-CgggCGAGAACGAGGCc -3'
miRNA:   3'- aCUGUCGGCuGgaaGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 150489 0.71 0.982492
Target:  5'- cUGGUAGCCGuCCcugUCGGAGGCGGAGg -3'
miRNA:   3'- -ACUGUCGGCuGGa--AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 90270 0.71 0.987919
Target:  5'- aGGCAGUagagguagaGGCCguggUCGAGGACGAGGa -3'
miRNA:   3'- aCUGUCGg--------CUGGa---AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 52721 0.7 0.994822
Target:  5'- gGGCGGCCGGCCa--GAAAGCucuuGACc -3'
miRNA:   3'- aCUGUCGGCUGGaagCUUUUGcu--UUG- -5'
28894 3' -47.7 NC_006146.1 + 2497 0.71 0.989403
Target:  5'- aGGCAGCUGGCCgaCGAGcuGAUGAu-- -3'
miRNA:   3'- aCUGUCGGCUGGaaGCUU--UUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 68875 0.71 0.986279
Target:  5'- cGACAGCCuGGCCcugaUgGAGAugGAGAa -3'
miRNA:   3'- aCUGUCGG-CUGGa---AgCUUUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 51619 0.74 0.942017
Target:  5'- gGACAGCCGGCUgaggUUGAGGGacggugacuacCGGAGCa -3'
miRNA:   3'- aCUGUCGGCUGGa---AGCUUUU-----------GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 40007 0.7 0.990741
Target:  5'- cGGCAGCCuuuGACCggUC--AGACGggGCa -3'
miRNA:   3'- aCUGUCGG---CUGGa-AGcuUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 143705 0.74 0.946716
Target:  5'- cUGGCA-CCGuCCUUUGAGGuACGAAACa -3'
miRNA:   3'- -ACUGUcGGCuGGAAGCUUU-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 94646 0.71 0.984473
Target:  5'- aUGAUGGCCGcCCUggGGAccACGAAGCg -3'
miRNA:   3'- -ACUGUCGGCuGGAagCUUu-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 56802 0.7 0.990741
Target:  5'- cGGCGGCCGuCUggCGG--GCGggGCu -3'
miRNA:   3'- aCUGUCGGCuGGaaGCUuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 149840 0.69 0.995571
Target:  5'- gGGCGGCCagGGCC-UCG---GCGAAGCg -3'
miRNA:   3'- aCUGUCGG--CUGGaAGCuuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 45821 0.74 0.946716
Target:  5'- -cACGGCCG-CC-UCGAAGACGGAGa -3'
miRNA:   3'- acUGUCGGCuGGaAGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 85591 0.73 0.966089
Target:  5'- aGGCAGCCGcCCgccUCGGAAGCuggcaccGggGCa -3'
miRNA:   3'- aCUGUCGGCuGGa--AGCUUUUG-------CuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.