miRNA display CGI


Results 1 - 20 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 772 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 1501 0.73 0.962972
Target:  5'- aUGGCAGCCGGCCU-CGuuuGggUGguGCu -3'
miRNA:   3'- -ACUGUCGGCUGGAaGCu--UuuGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 1703 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 2497 0.71 0.989403
Target:  5'- aGGCAGCUGGCCgaCGAGcuGAUGAu-- -3'
miRNA:   3'- aCUGUCGGCUGGaaGCUU--UUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 2635 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 3567 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 9904 0.67 0.999547
Target:  5'- gUGACGGCCaGGCaggaGgcGACGGAGCc -3'
miRNA:   3'- -ACUGUCGG-CUGgaagCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 10302 0.83 0.576095
Target:  5'- aGGCGGCCGACC-UCGggGGC-AAGCa -3'
miRNA:   3'- aCUGUCGGCUGGaAGCuuUUGcUUUG- -5'
28894 3' -47.7 NC_006146.1 + 10456 0.67 0.999134
Target:  5'- cGAgAGCgCcGCCUUCGuGAugGggGCc -3'
miRNA:   3'- aCUgUCG-GcUGGAAGCuUUugCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 11519 0.73 0.959282
Target:  5'- gGACAGCgCGGCCUgCGAGcuGGCGGucAGCu -3'
miRNA:   3'- aCUGUCG-GCUGGAaGCUU--UUGCU--UUG- -5'
28894 3' -47.7 NC_006146.1 + 12837 0.68 0.99774
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccuggGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU-----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 14553 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 15598 0.67 0.999434
Target:  5'- cGAgGGCgCGGCCUUUGAGAAUu---- -3'
miRNA:   3'- aCUgUCG-GCUGGAAGCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 15916 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 17631 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 18649 0.75 0.922925
Target:  5'- aGGCAGCCagggaucgcaugcccGGCCUUCGcAGGCGAcGCu -3'
miRNA:   3'- aCUGUCGG---------------CUGGAAGCuUUUGCUuUG- -5'
28894 3' -47.7 NC_006146.1 + 18993 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 19419 0.69 0.997306
Target:  5'- cGGguGCCaGAUCUUCGAAgccAACGuGGACg -3'
miRNA:   3'- aCUguCGG-CUGGAAGCUU---UUGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 19617 0.67 0.999134
Target:  5'- -cACGGCCcuGGCCUUCGAuauCGAGu- -3'
miRNA:   3'- acUGUCGG--CUGGAAGCUuuuGCUUug -5'
28894 3' -47.7 NC_006146.1 + 20577 0.71 0.986279
Target:  5'- aGACuAGCCGGCCUgCGcccGGGCGAGGa -3'
miRNA:   3'- aCUG-UCGGCUGGAaGCu--UUUGCUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.