miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 3' -54.5 NC_006146.1 + 10389 0.68 0.853371
Target:  5'- gGUCGCgGcuCAGGguGGUGCUGU-GCUa -3'
miRNA:   3'- -CAGUGgUu-GUUCguCCACGACGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 10870 0.68 0.861305
Target:  5'- aUCACCGugGAGCcGG-GCUuCAGCa -3'
miRNA:   3'- cAGUGGUugUUCGuCCaCGAcGUCGa -5'
28896 3' -54.5 NC_006146.1 + 10976 0.67 0.89759
Target:  5'- aGUCACCua-AAGCAGGcggcGCUGcCGGUg -3'
miRNA:   3'- -CAGUGGuugUUCGUCCa---CGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 14974 0.66 0.94295
Target:  5'- ---uUCAACGGGCaAGGgagaggGCUGCGGCc -3'
miRNA:   3'- caguGGUUGUUCG-UCCa-----CGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 20304 0.71 0.682746
Target:  5'- aUCGCCcacauccccuGCAGGCGGGUGCUGgacgauggcCAGCa -3'
miRNA:   3'- cAGUGGu---------UGUUCGUCCACGAC---------GUCGa -5'
28896 3' -54.5 NC_006146.1 + 24846 1.08 0.003894
Target:  5'- gGUCACCAACAAGCAGGUGCUGCAGCUg -3'
miRNA:   3'- -CAGUGGUUGUUCGUCCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 38891 0.68 0.840239
Target:  5'- uGUCACCGcCccuGCAGGUGCagaagucaacacaccUGCAGUg -3'
miRNA:   3'- -CAGUGGUuGuu-CGUCCACG---------------ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 39759 0.67 0.904134
Target:  5'- gGUguCCAGCAgaucgcagacgcGGCAGGUGCUG--GCUg -3'
miRNA:   3'- -CAguGGUUGU------------UCGUCCACGACguCGA- -5'
28896 3' -54.5 NC_006146.1 + 40075 0.71 0.734015
Target:  5'- cGUCucCCGGCGgagggccugcAGCGcGUGCUGCAGCUc -3'
miRNA:   3'- -CAGu-GGUUGU----------UCGUcCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 40543 0.66 0.927823
Target:  5'- gGUCugCAGCAGGgucaugaAGGUGgUGCGGg- -3'
miRNA:   3'- -CAGugGUUGUUCg------UCCACgACGUCga -5'
28896 3' -54.5 NC_006146.1 + 41704 0.69 0.79235
Target:  5'- cUCACCGGCGGG-GGGUGCgGC-GCUg -3'
miRNA:   3'- cAGUGGUUGUUCgUCCACGaCGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 42752 0.66 0.91648
Target:  5'- aUCGCCugcggcAGCAGGgccgaCAGGUGCagGCGGCg -3'
miRNA:   3'- cAGUGG------UUGUUC-----GUCCACGa-CGUCGa -5'
28896 3' -54.5 NC_006146.1 + 50174 0.67 0.908569
Target:  5'- cGUCACgAugGGGgugaucucccggauCAGGUGCUGCuccAGCg -3'
miRNA:   3'- -CAGUGgUugUUC--------------GUCCACGACG---UCGa -5'
28896 3' -54.5 NC_006146.1 + 54683 0.66 0.927823
Target:  5'- -cCGCCGACAAGCGGacGgaGCAGaCUg -3'
miRNA:   3'- caGUGGUUGUUCGUCcaCgaCGUC-GA- -5'
28896 3' -54.5 NC_006146.1 + 58941 0.69 0.810681
Target:  5'- --gGCCAAUcuGUgcgcugAGGUGCUGCAGCc -3'
miRNA:   3'- cagUGGUUGuuCG------UCCACGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 59640 0.66 0.933117
Target:  5'- gGUCACCAACAAGgAGGaagcGCUcaGGCc -3'
miRNA:   3'- -CAGUGGUUGUUCgUCCa---CGAcgUCGa -5'
28896 3' -54.5 NC_006146.1 + 59909 0.7 0.773411
Target:  5'- --gGCCAACcuGCuGGUGC-GCGGCUa -3'
miRNA:   3'- cagUGGUUGuuCGuCCACGaCGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 60809 0.67 0.883776
Target:  5'- --gGCCAACAacuacauaAGCAGGgacgaGCUGCuGCa -3'
miRNA:   3'- cagUGGUUGU--------UCGUCCa----CGACGuCGa -5'
28896 3' -54.5 NC_006146.1 + 61755 0.66 0.927823
Target:  5'- -gCAUCugauUggGCAGGUGCUGCugauGCc -3'
miRNA:   3'- caGUGGuu--GuuCGUCCACGACGu---CGa -5'
28896 3' -54.5 NC_006146.1 + 62605 0.66 0.927823
Target:  5'- -cCGCCGcagGCAaugAGCGGGaGCUGCuGCg -3'
miRNA:   3'- caGUGGU---UGU---UCGUCCaCGACGuCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.