miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 3' -54.5 NC_006146.1 + 64267 0.74 0.536814
Target:  5'- --aGCCGGCcgcAGCAGGcGCUGCGGCa -3'
miRNA:   3'- cagUGGUUGu--UCGUCCaCGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 64667 0.67 0.904134
Target:  5'- cGUCGCCGu--GGUAGGUGgucucCUGUAGCc -3'
miRNA:   3'- -CAGUGGUuguUCGUCCAC-----GACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 65469 0.69 0.810681
Target:  5'- -aCGCUGGCGGGCugugcGGGUGCUG-AGCUg -3'
miRNA:   3'- caGUGGUUGUUCG-----UCCACGACgUCGA- -5'
28896 3' -54.5 NC_006146.1 + 72511 0.66 0.94295
Target:  5'- -gCGCCugcgGAgGAGCGGacgGCUGCGGCUc -3'
miRNA:   3'- caGUGG----UUgUUCGUCca-CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 72557 0.72 0.629319
Target:  5'- -cCGCCAAUggGCGccggcguGGUGCUGgGGCUu -3'
miRNA:   3'- caGUGGUUGuuCGU-------CCACGACgUCGA- -5'
28896 3' -54.5 NC_006146.1 + 88158 0.68 0.845225
Target:  5'- uUCACgagguguagaUAACAauGGCA-GUGCUGCAGCUg -3'
miRNA:   3'- cAGUG----------GUUGU--UCGUcCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 99813 0.69 0.828329
Target:  5'- -gCACCGGCGAGgGGGUGUUcGgGGCc -3'
miRNA:   3'- caGUGGUUGUUCgUCCACGA-CgUCGa -5'
28896 3' -54.5 NC_006146.1 + 104456 0.66 0.91648
Target:  5'- -gCGCCcuC-GGCAGGcaGCUGCGGCUc -3'
miRNA:   3'- caGUGGuuGuUCGUCCa-CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 107385 0.67 0.890803
Target:  5'- aGUCAgaaaAGCGuAGCAGGguccaggGCUGCGGCg -3'
miRNA:   3'- -CAGUgg--UUGU-UCGUCCa------CGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 108394 0.66 0.933117
Target:  5'- -aCACgCAGCcccccaGGGcCAGGUGCUGCuGGCa -3'
miRNA:   3'- caGUG-GUUG------UUC-GUCCACGACG-UCGa -5'
28896 3' -54.5 NC_006146.1 + 109533 0.67 0.890803
Target:  5'- cUCACaGAC-AGCAGGUugacCUGCAGCa -3'
miRNA:   3'- cAGUGgUUGuUCGUCCAc---GACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 111001 0.66 0.921709
Target:  5'- -gCACCAGCAGGUuggccAGcGUGCUggcccgcGCGGCg -3'
miRNA:   3'- caGUGGUUGUUCG-----UC-CACGA-------CGUCGa -5'
28896 3' -54.5 NC_006146.1 + 114469 0.69 0.819595
Target:  5'- --gGCCc---AGCAGGUGCUGguGCg -3'
miRNA:   3'- cagUGGuuguUCGUCCACGACguCGa -5'
28896 3' -54.5 NC_006146.1 + 115006 0.66 0.933117
Target:  5'- aUgGCCGugGAGCuGGUGgaGCGGg- -3'
miRNA:   3'- cAgUGGUugUUCGuCCACgaCGUCga -5'
28896 3' -54.5 NC_006146.1 + 115446 0.66 0.94295
Target:  5'- --gGCCAuCGAGCGGGUggccacgguacuGCUGuCGGCg -3'
miRNA:   3'- cagUGGUuGUUCGUCCA------------CGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 115652 0.67 0.909192
Target:  5'- -cCGCCAccCGGGCGGGggucaugguggaGCUGUAGCUg -3'
miRNA:   3'- caGUGGUu-GUUCGUCCa-----------CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 130495 0.69 0.800679
Target:  5'- cUCACCAugAuuaacuaGGUcuaGGGUGCUGuCAGCa -3'
miRNA:   3'- cAGUGGUugU-------UCG---UCCACGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 142307 0.68 0.836875
Target:  5'- uUCuCCAcaGGGCAGGUGUgaaGCGGCUg -3'
miRNA:   3'- cAGuGGUugUUCGUCCACGa--CGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 142537 0.67 0.904134
Target:  5'- --aACCAugGAGguGGuUGCggUGCAGCc -3'
miRNA:   3'- cagUGGUugUUCguCC-ACG--ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 146014 0.71 0.682746
Target:  5'- -cCACCGAgGGGCAGG-GggGCAGCUc -3'
miRNA:   3'- caGUGGUUgUUCGUCCaCgaCGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.