Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28896 | 3' | -54.5 | NC_006146.1 | + | 72511 | 0.66 | 0.94295 |
Target: 5'- -gCGCCugcgGAgGAGCGGacgGCUGCGGCUc -3' miRNA: 3'- caGUGG----UUgUUCGUCca-CGACGUCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 65469 | 0.69 | 0.810681 |
Target: 5'- -aCGCUGGCGGGCugugcGGGUGCUG-AGCUg -3' miRNA: 3'- caGUGGUUGUUCG-----UCCACGACgUCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 64667 | 0.67 | 0.904134 |
Target: 5'- cGUCGCCGu--GGUAGGUGgucucCUGUAGCc -3' miRNA: 3'- -CAGUGGUuguUCGUCCAC-----GACGUCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 64267 | 0.74 | 0.536814 |
Target: 5'- --aGCCGGCcgcAGCAGGcGCUGCGGCa -3' miRNA: 3'- cagUGGUUGu--UCGUCCaCGACGUCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 62605 | 0.66 | 0.927823 |
Target: 5'- -cCGCCGcagGCAaugAGCGGGaGCUGCuGCg -3' miRNA: 3'- caGUGGU---UGU---UCGUCCaCGACGuCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 61755 | 0.66 | 0.927823 |
Target: 5'- -gCAUCugauUggGCAGGUGCUGCugauGCc -3' miRNA: 3'- caGUGGuu--GuuCGUCCACGACGu---CGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 60809 | 0.67 | 0.883776 |
Target: 5'- --gGCCAACAacuacauaAGCAGGgacgaGCUGCuGCa -3' miRNA: 3'- cagUGGUUGU--------UCGUCCa----CGACGuCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 59909 | 0.7 | 0.773411 |
Target: 5'- --gGCCAACcuGCuGGUGC-GCGGCUa -3' miRNA: 3'- cagUGGUUGuuCGuCCACGaCGUCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 59640 | 0.66 | 0.933117 |
Target: 5'- gGUCACCAACAAGgAGGaagcGCUcaGGCc -3' miRNA: 3'- -CAGUGGUUGUUCgUCCa---CGAcgUCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 58941 | 0.69 | 0.810681 |
Target: 5'- --gGCCAAUcuGUgcgcugAGGUGCUGCAGCc -3' miRNA: 3'- cagUGGUUGuuCG------UCCACGACGUCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 54683 | 0.66 | 0.927823 |
Target: 5'- -cCGCCGACAAGCGGacGgaGCAGaCUg -3' miRNA: 3'- caGUGGUUGUUCGUCcaCgaCGUC-GA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 50174 | 0.67 | 0.908569 |
Target: 5'- cGUCACgAugGGGgugaucucccggauCAGGUGCUGCuccAGCg -3' miRNA: 3'- -CAGUGgUugUUC--------------GUCCACGACG---UCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 42752 | 0.66 | 0.91648 |
Target: 5'- aUCGCCugcggcAGCAGGgccgaCAGGUGCagGCGGCg -3' miRNA: 3'- cAGUGG------UUGUUC-----GUCCACGa-CGUCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 41704 | 0.69 | 0.79235 |
Target: 5'- cUCACCGGCGGG-GGGUGCgGC-GCUg -3' miRNA: 3'- cAGUGGUUGUUCgUCCACGaCGuCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 40543 | 0.66 | 0.927823 |
Target: 5'- gGUCugCAGCAGGgucaugaAGGUGgUGCGGg- -3' miRNA: 3'- -CAGugGUUGUUCg------UCCACgACGUCga -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 40075 | 0.71 | 0.734015 |
Target: 5'- cGUCucCCGGCGgagggccugcAGCGcGUGCUGCAGCUc -3' miRNA: 3'- -CAGu-GGUUGU----------UCGUcCACGACGUCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 39759 | 0.67 | 0.904134 |
Target: 5'- gGUguCCAGCAgaucgcagacgcGGCAGGUGCUG--GCUg -3' miRNA: 3'- -CAguGGUUGU------------UCGUCCACGACguCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 38891 | 0.68 | 0.840239 |
Target: 5'- uGUCACCGcCccuGCAGGUGCagaagucaacacaccUGCAGUg -3' miRNA: 3'- -CAGUGGUuGuu-CGUCCACG---------------ACGUCGa -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 24846 | 1.08 | 0.003894 |
Target: 5'- gGUCACCAACAAGCAGGUGCUGCAGCUg -3' miRNA: 3'- -CAGUGGUUGUUCGUCCACGACGUCGA- -5' |
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28896 | 3' | -54.5 | NC_006146.1 | + | 20304 | 0.71 | 0.682746 |
Target: 5'- aUCGCCcacauccccuGCAGGCGGGUGCUGgacgauggcCAGCa -3' miRNA: 3'- cAGUGGu---------UGUUCGUCCACGAC---------GUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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