miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 3' -54.5 NC_006146.1 + 64267 0.74 0.536814
Target:  5'- --aGCCGGCcgcAGCAGGcGCUGCGGCa -3'
miRNA:   3'- cagUGGUUGu--UCGUCCaCGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 88158 0.68 0.845225
Target:  5'- uUCACgagguguagaUAACAauGGCA-GUGCUGCAGCUg -3'
miRNA:   3'- cAGUG----------GUUGU--UCGUcCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 62605 0.66 0.927823
Target:  5'- -cCGCCGcagGCAaugAGCGGGaGCUGCuGCg -3'
miRNA:   3'- caGUGGU---UGU---UCGUCCaCGACGuCGa -5'
28896 3' -54.5 NC_006146.1 + 24846 1.08 0.003894
Target:  5'- gGUCACCAACAAGCAGGUGCUGCAGCUg -3'
miRNA:   3'- -CAGUGGUUGUUCGUCCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 108394 0.66 0.933117
Target:  5'- -aCACgCAGCcccccaGGGcCAGGUGCUGCuGGCa -3'
miRNA:   3'- caGUG-GUUG------UUC-GUCCACGACG-UCGa -5'
28896 3' -54.5 NC_006146.1 + 54683 0.66 0.927823
Target:  5'- -cCGCCGACAAGCGGacGgaGCAGaCUg -3'
miRNA:   3'- caGUGGUUGUUCGUCcaCgaCGUC-GA- -5'
28896 3' -54.5 NC_006146.1 + 40543 0.66 0.927823
Target:  5'- gGUCugCAGCAGGgucaugaAGGUGgUGCGGg- -3'
miRNA:   3'- -CAGugGUUGUUCg------UCCACgACGUCga -5'
28896 3' -54.5 NC_006146.1 + 111001 0.66 0.921709
Target:  5'- -gCACCAGCAGGUuggccAGcGUGCUggcccgcGCGGCg -3'
miRNA:   3'- caGUGGUUGUUCG-----UC-CACGA-------CGUCGa -5'
28896 3' -54.5 NC_006146.1 + 104456 0.66 0.91648
Target:  5'- -gCGCCcuC-GGCAGGcaGCUGCGGCUc -3'
miRNA:   3'- caGUGGuuGuUCGUCCa-CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 42752 0.66 0.91648
Target:  5'- aUCGCCugcggcAGCAGGgccgaCAGGUGCagGCGGCg -3'
miRNA:   3'- cAGUGG------UUGUUC-----GUCCACGa-CGUCGa -5'
28896 3' -54.5 NC_006146.1 + 50174 0.67 0.908569
Target:  5'- cGUCACgAugGGGgugaucucccggauCAGGUGCUGCuccAGCg -3'
miRNA:   3'- -CAGUGgUugUUC--------------GUCCACGACG---UCGa -5'
28896 3' -54.5 NC_006146.1 + 109533 0.67 0.890803
Target:  5'- cUCACaGAC-AGCAGGUugacCUGCAGCa -3'
miRNA:   3'- cAGUGgUUGuUCGUCCAc---GACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 10870 0.68 0.861305
Target:  5'- aUCACCGugGAGCcGG-GCUuCAGCa -3'
miRNA:   3'- cAGUGGUugUUCGuCCaCGAcGUCGa -5'
28896 3' -54.5 NC_006146.1 + 10389 0.68 0.853371
Target:  5'- gGUCGCgGcuCAGGguGGUGCUGU-GCUa -3'
miRNA:   3'- -CAGUGgUu-GUUCguCCACGACGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 38891 0.68 0.840239
Target:  5'- uGUCACCGcCccuGCAGGUGCagaagucaacacaccUGCAGUg -3'
miRNA:   3'- -CAGUGGUuGuu-CGUCCACG---------------ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 114469 0.69 0.819595
Target:  5'- --gGCCc---AGCAGGUGCUGguGCg -3'
miRNA:   3'- cagUGGuuguUCGUCCACGACguCGa -5'
28896 3' -54.5 NC_006146.1 + 130495 0.69 0.800679
Target:  5'- cUCACCAugAuuaacuaGGUcuaGGGUGCUGuCAGCa -3'
miRNA:   3'- cAGUGGUugU-------UCG---UCCACGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 159918 0.7 0.763736
Target:  5'- cGUCACCGGCAGcGCcgccugcuuuAGGUGCacUGUGGCa -3'
miRNA:   3'- -CAGUGGUUGUU-CG----------UCCACG--ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 40075 0.71 0.734015
Target:  5'- cGUCucCCGGCGgagggccugcAGCGcGUGCUGCAGCUc -3'
miRNA:   3'- -CAGu-GGUUGU----------UCGUcCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 20304 0.71 0.682746
Target:  5'- aUCGCCcacauccccuGCAGGCGGGUGCUGgacgauggcCAGCa -3'
miRNA:   3'- cAGUGGu---------UGUUCGUCCACGAC---------GUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.