miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 138970 0.66 0.607235
Target:  5'- -----cGCCCCgCUUGCCUCaCGGUGGc -3'
miRNA:   3'- ccucgaCGGGG-GGACGGGGaGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 32911 0.66 0.597704
Target:  5'- gGGGGCgcaCCCCCCaccccgccgGCCCC-CGGgaGGc -3'
miRNA:   3'- -CCUCGac-GGGGGGa--------CGGGGaGCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 84647 0.66 0.597704
Target:  5'- cGuGCUGCCCacgugCCUGCugucaaccaagCCCaaggCGGUGGa -3'
miRNA:   3'- cCuCGACGGGg----GGACG-----------GGGa---GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 45287 0.66 0.597704
Target:  5'- -cAGCccaUGCCCCa----CCCUCGGUGGa -3'
miRNA:   3'- ccUCG---ACGGGGggacgGGGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 166033 0.66 0.597704
Target:  5'- cGGGGgUGCCuguggcccccgCCCCUGCCCCUa----- -3'
miRNA:   3'- -CCUCgACGG-----------GGGGACGGGGAgccacc -5'
28896 5' -64.3 NC_006146.1 + 49215 0.66 0.591996
Target:  5'- uGGGGUccaggauacggucgaUGCCCUCCUGCaCCUcCGGguccaGGg -3'
miRNA:   3'- -CCUCG---------------ACGGGGGGACG-GGGaGCCa----CC- -5'
28896 5' -64.3 NC_006146.1 + 18617 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 12460 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 15539 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 24773 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 21695 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 27851 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 126526 0.66 0.588196
Target:  5'- gGGAGCagguaGCCUCCuuuuugucuCUGCCCC-CGG-GGc -3'
miRNA:   3'- -CCUCGa----CGGGGG---------GACGGGGaGCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 118982 0.66 0.578714
Target:  5'- cGGGGCcGCCCgUCgGUgCCUCGGaGGc -3'
miRNA:   3'- -CCUCGaCGGGgGGaCGgGGAGCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 130066 0.66 0.578714
Target:  5'- aGAGCg--CCCCCUGCCCCUUa---- -3'
miRNA:   3'- cCUCGacgGGGGGACGGGGAGccacc -5'
28896 5' -64.3 NC_006146.1 + 56820 0.66 0.578714
Target:  5'- cGGGGCUucugGCCCCCgaggcgGCCUCUggCGGcGGg -3'
miRNA:   3'- -CCUCGA----CGGGGGga----CGGGGA--GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 31819 0.66 0.578714
Target:  5'- uGAGUUacaGCCCCCCgcgccaccaggGCCCgUaUGGUGGc -3'
miRNA:   3'- cCUCGA---CGGGGGGa----------CGGGgA-GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 142977 0.66 0.578714
Target:  5'- gGGGGCUuCCgCCCUaGCCCUUgGccGUGGg -3'
miRNA:   3'- -CCUCGAcGGgGGGA-CGGGGAgC--CACC- -5'
28896 5' -64.3 NC_006146.1 + 121751 0.66 0.569267
Target:  5'- -aGGCUGCCCuggaaCCCgUGCgCCU-GGUGGc -3'
miRNA:   3'- ccUCGACGGG-----GGG-ACGgGGAgCCACC- -5'
28896 5' -64.3 NC_006146.1 + 84482 0.66 0.569267
Target:  5'- -cAGCUGCCCCCCUaccgauucugGCUgugguguuuuCCUCGGa-- -3'
miRNA:   3'- ccUCGACGGGGGGA----------CGG----------GGAGCCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.