Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28896 | 5' | -64.3 | NC_006146.1 | + | 138970 | 0.66 | 0.607235 |
Target: 5'- -----cGCCCCgCUUGCCUCaCGGUGGc -3' miRNA: 3'- ccucgaCGGGG-GGACGGGGaGCCACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 84647 | 0.66 | 0.597704 |
Target: 5'- cGuGCUGCCCacgugCCUGCugucaaccaagCCCaaggCGGUGGa -3' miRNA: 3'- cCuCGACGGGg----GGACG-----------GGGa---GCCACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 45287 | 0.66 | 0.597704 |
Target: 5'- -cAGCccaUGCCCCa----CCCUCGGUGGa -3' miRNA: 3'- ccUCG---ACGGGGggacgGGGAGCCACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 166033 | 0.66 | 0.597704 |
Target: 5'- cGGGGgUGCCuguggcccccgCCCCUGCCCCUa----- -3' miRNA: 3'- -CCUCgACGG-----------GGGGACGGGGAgccacc -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 32911 | 0.66 | 0.597704 |
Target: 5'- gGGGGCgcaCCCCCCaccccgccgGCCCC-CGGgaGGc -3' miRNA: 3'- -CCUCGac-GGGGGGa--------CGGGGaGCCa-CC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 49215 | 0.66 | 0.591996 |
Target: 5'- uGGGGUccaggauacggucgaUGCCCUCCUGCaCCUcCGGguccaGGg -3' miRNA: 3'- -CCUCG---------------ACGGGGGGACG-GGGaGCCa----CC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 126526 | 0.66 | 0.588196 |
Target: 5'- gGGAGCagguaGCCUCCuuuuugucuCUGCCCC-CGG-GGc -3' miRNA: 3'- -CCUCGa----CGGGGG---------GACGGGGaGCCaCC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 18617 | 0.66 | 0.588196 |
Target: 5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3' miRNA: 3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 12460 | 0.66 | 0.588196 |
Target: 5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3' miRNA: 3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 15539 | 0.66 | 0.588196 |
Target: 5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3' miRNA: 3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 21695 | 0.66 | 0.588196 |
Target: 5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3' miRNA: 3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 24773 | 0.66 | 0.588196 |
Target: 5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3' miRNA: 3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 27851 | 0.66 | 0.588196 |
Target: 5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3' miRNA: 3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 31819 | 0.66 | 0.578714 |
Target: 5'- uGAGUUacaGCCCCCCgcgccaccaggGCCCgUaUGGUGGc -3' miRNA: 3'- cCUCGA---CGGGGGGa----------CGGGgA-GCCACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 130066 | 0.66 | 0.578714 |
Target: 5'- aGAGCg--CCCCCUGCCCCUUa---- -3' miRNA: 3'- cCUCGacgGGGGGACGGGGAGccacc -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 118982 | 0.66 | 0.578714 |
Target: 5'- cGGGGCcGCCCgUCgGUgCCUCGGaGGc -3' miRNA: 3'- -CCUCGaCGGGgGGaCGgGGAGCCaCC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 142977 | 0.66 | 0.578714 |
Target: 5'- gGGGGCUuCCgCCCUaGCCCUUgGccGUGGg -3' miRNA: 3'- -CCUCGAcGGgGGGA-CGGGGAgC--CACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 56820 | 0.66 | 0.578714 |
Target: 5'- cGGGGCUucugGCCCCCgaggcgGCCUCUggCGGcGGg -3' miRNA: 3'- -CCUCGA----CGGGGGga----CGGGGA--GCCaCC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 119936 | 0.66 | 0.569267 |
Target: 5'- uGGcAGCgGCgCUgCUGCCggaggUCUCGGUGGg -3' miRNA: 3'- -CC-UCGaCGgGGgGACGG-----GGAGCCACC- -5' |
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28896 | 5' | -64.3 | NC_006146.1 | + | 84482 | 0.66 | 0.569267 |
Target: 5'- -cAGCUGCCCCCCUaccgauucugGCUgugguguuuuCCUCGGa-- -3' miRNA: 3'- ccUCGACGGGGGGA----------CGG----------GGAGCCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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