miRNA display CGI


Results 41 - 60 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 127502 0.7 0.603726
Target:  5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3'
miRNA:   3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 61589 0.7 0.613922
Target:  5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3'
miRNA:   3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 41357 0.7 0.613922
Target:  5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3'
miRNA:   3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 54037 0.7 0.620047
Target:  5'- cGGAGGGCggccaugucggcgGUGGUCAgggcccaccUGGCCGCCGCg -3'
miRNA:   3'- -CUUCUUGa------------CGUCGGU---------ACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 146218 0.7 0.624132
Target:  5'- cGggGuaAGCgGCGGCCAUGGCUGCaGUUc -3'
miRNA:   3'- -CuuC--UUGaCGUCGGUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 52888 0.7 0.624132
Target:  5'- gGGAGAACUGgucaCGGCCGUGaGCUacgGCCGUg -3'
miRNA:   3'- -CUUCUUGAC----GUCGGUAC-CGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 117875 0.69 0.634348
Target:  5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3'
miRNA:   3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 55926 0.69 0.634348
Target:  5'- --uGAugUccGCGGCCGUgGGCUGCUGCg -3'
miRNA:   3'- cuuCUugA--CGUCGGUA-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 124833 0.69 0.654766
Target:  5'- cGAGGcccuGCaGCAGCUAUGGCacuCGCUGCg -3'
miRNA:   3'- -CUUCu---UGaCGUCGGUACCG---GCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 58956 0.69 0.663934
Target:  5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3'
miRNA:   3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 44022 0.69 0.664952
Target:  5'- cGggGAGgggGCGGCCGagGGCC-CCGCUu -3'
miRNA:   3'- -CuuCUUga-CGUCGGUa-CCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 94930 0.69 0.664952
Target:  5'- -cAGAcgaUGCAGgggaCGUGGCCGCUGCg -3'
miRNA:   3'- cuUCUug-ACGUCg---GUACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 155763 0.69 0.664952
Target:  5'- cGAGGAGCUGUAGaCC----CCGCCGCa -3'
miRNA:   3'- -CUUCUUGACGUC-GGuaccGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 131078 0.69 0.675111
Target:  5'- ------gUGCGGCCGaGGCCGCCGg- -3'
miRNA:   3'- cuucuugACGUCGGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 39809 0.69 0.675111
Target:  5'- -uGGGACgGCGGCCGUugacggcccggcGGCCucgGCCGCa -3'
miRNA:   3'- cuUCUUGaCGUCGGUA------------CCGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 33218 0.69 0.685236
Target:  5'- -uGGuGCUccgggGCAGCCggGUGGCCGCCGg- -3'
miRNA:   3'- cuUCuUGA-----CGUCGG--UACCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 113505 0.69 0.685236
Target:  5'- -cAGGAg-GgGGCCAUGGCCGCCa-- -3'
miRNA:   3'- cuUCUUgaCgUCGGUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 13450 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 69276 0.68 0.705345
Target:  5'- --cGAACgGCGGCCGUuGCCaCCGCg -3'
miRNA:   3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 33105 0.68 0.705345
Target:  5'- -------gGCAGCCggGUGGCCGCCGg- -3'
miRNA:   3'- cuucuugaCGUCGG--UACCGGCGGCga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.