miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28898 5' -54.3 NC_006146.1 + 24493 1.06 0.005681
Target:  5'- cAUCUACAACUGCGGGGACAAGCCACUg -3'
miRNA:   3'- -UAGAUGUUGACGCCCCUGUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 67643 0.73 0.602448
Target:  5'- uGUCUguaaGCucauCUGCGGGGACGcGGCCGCc -3'
miRNA:   3'- -UAGA----UGuu--GACGCCCCUGU-UCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 141641 0.73 0.623327
Target:  5'- ---gGCGGCUGCGGGGGacgcuggcacacCGGGCCGCc -3'
miRNA:   3'- uagaUGUUGACGCCCCU------------GUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 147796 0.73 0.623327
Target:  5'- ---gGCGGCUGCGGGGGacgcuggcacacCGGGCCGCc -3'
miRNA:   3'- uagaUGUUGACGCCCCU------------GUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 150874 0.73 0.623327
Target:  5'- ---gGCGGCUGCGGGGGacgcuggcacacCGGGCCGCc -3'
miRNA:   3'- uagaUGUUGACGCCCCU------------GUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 153952 0.73 0.623327
Target:  5'- ---gGCGGCUGCGGGGGacgcuggcacacCGGGCCGCc -3'
miRNA:   3'- uagaUGUUGACGCCCCU------------GUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 157030 0.73 0.623327
Target:  5'- ---gGCGGCUGCGGGGGacgcuggcacacCGGGCCGCc -3'
miRNA:   3'- uagaUGUUGACGCCCCU------------GUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 144718 0.73 0.623327
Target:  5'- ---gGCGGCUGCGGGGGacgcuggcacacCGGGCCGCc -3'
miRNA:   3'- uagaUGUUGACGCCCCU------------GUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 127900 0.72 0.696168
Target:  5'- gAUCUACAACcuguuUGCGGGcGcCGGGCUGCUg -3'
miRNA:   3'- -UAGAUGUUG-----ACGCCC-CuGUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 55191 0.7 0.775838
Target:  5'- -gCUGCGGCcGCGGcGGGCGAGCguCUc -3'
miRNA:   3'- uaGAUGUUGaCGCC-CCUGUUCGguGA- -5'
28898 5' -54.3 NC_006146.1 + 129506 0.7 0.79461
Target:  5'- cGUCUACGuCUGCGGGuucGugGAGCgGCc -3'
miRNA:   3'- -UAGAUGUuGACGCCC---CugUUCGgUGa -5'
28898 5' -54.3 NC_006146.1 + 110872 0.7 0.79461
Target:  5'- -gCUGCGucucgggcucggGCgcagGCGGGGACGGGgCCGCg -3'
miRNA:   3'- uaGAUGU------------UGa---CGCCCCUGUUC-GGUGa -5'
28898 5' -54.3 NC_006146.1 + 92165 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92315 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92285 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92046 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92016 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92105 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92135 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92195 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.