miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28898 5' -54.3 NC_006146.1 + 2469 0.69 0.846971
Target:  5'- gGUCUuuGGCgguguggccgGCGGGGGCAGGCaGCUg -3'
miRNA:   3'- -UAGAugUUGa---------CGCCCCUGUUCGgUGA- -5'
28898 5' -54.3 NC_006146.1 + 10890 0.66 0.943581
Target:  5'- ---gACAGCgggGCGGuGGGCAAugcGCCACc -3'
miRNA:   3'- uagaUGUUGa--CGCC-CCUGUU---CGGUGa -5'
28898 5' -54.3 NC_006146.1 + 15771 0.69 0.838707
Target:  5'- -gCUGCGACgccGCGGGGACcuuGCCcCa -3'
miRNA:   3'- uaGAUGUUGa--CGCCCCUGuu-CGGuGa -5'
28898 5' -54.3 NC_006146.1 + 24493 1.06 0.005681
Target:  5'- cAUCUACAACUGCGGGGACAAGCCACUg -3'
miRNA:   3'- -UAGAUGUUGACGCCCCUGUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 44344 0.68 0.885106
Target:  5'- uUCUGCAcaggugGCUGaUGGGGACGAgguGCCAg- -3'
miRNA:   3'- uAGAUGU------UGAC-GCCCCUGUU---CGGUga -5'
28898 5' -54.3 NC_006146.1 + 48962 0.67 0.923159
Target:  5'- uUCUugAGCUuccCGGGGAUGAGCguCUg -3'
miRNA:   3'- uAGAugUUGAc--GCCCCUGUUCGguGA- -5'
28898 5' -54.3 NC_006146.1 + 55191 0.7 0.775838
Target:  5'- -gCUGCGGCcGCGGcGGGCGAGCguCUc -3'
miRNA:   3'- uaGAUGUUGaCGCC-CCUGUUCGguGA- -5'
28898 5' -54.3 NC_006146.1 + 60344 0.68 0.862882
Target:  5'- uGUCUACu-CUGCGGuGGGCA-GCCuCUu -3'
miRNA:   3'- -UAGAUGuuGACGCC-CCUGUuCGGuGA- -5'
28898 5' -54.3 NC_006146.1 + 60817 0.69 0.846971
Target:  5'- -aCUACAuaaGCaGGGACGAGCUGCUg -3'
miRNA:   3'- uaGAUGUugaCGcCCCUGUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 67643 0.73 0.602448
Target:  5'- uGUCUguaaGCucauCUGCGGGGACGcGGCCGCc -3'
miRNA:   3'- -UAGA----UGuu--GACGCCCCUGU-UCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 72528 0.66 0.948068
Target:  5'- ---gACGGCUGCGGcucucGGgGAGCCACg -3'
miRNA:   3'- uagaUGUUGACGCCc----CUgUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 73441 0.66 0.948068
Target:  5'- uUgUAgAACU-CGGGGACGuugguGGCCACg -3'
miRNA:   3'- uAgAUgUUGAcGCCCCUGU-----UCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 92016 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92046 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92105 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92135 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92165 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92195 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92225 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5'
28898 5' -54.3 NC_006146.1 + 92255 0.69 0.81277
Target:  5'- -gCUGCuGCUG-GGGGGCGGGCC-Cg -3'
miRNA:   3'- uaGAUGuUGACgCCCCUGUUCGGuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.