miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28898 5' -54.3 NC_006146.1 + 127900 0.72 0.696168
Target:  5'- gAUCUACAACcuguuUGCGGGcGcCGGGCUGCUg -3'
miRNA:   3'- -UAGAUGUUG-----ACGCCC-CuGUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135399 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135585 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 137536 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 60817 0.69 0.846971
Target:  5'- -aCUACAuaaGCaGGGACGAGCUGCUg -3'
miRNA:   3'- uaGAUGUugaCGcCCCUGUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 2469 0.69 0.846971
Target:  5'- gGUCUuuGGCgguguggccgGCGGGGGCAGGCaGCUg -3'
miRNA:   3'- -UAGAugUUGa---------CGCCCCUGUUCGgUGA- -5'
28898 5' -54.3 NC_006146.1 + 44344 0.68 0.885106
Target:  5'- uUCUGCAcaggugGCUGaUGGGGACGAgguGCCAg- -3'
miRNA:   3'- uAGAUGU------UGAC-GCCCCUGUU---CGGUga -5'
28898 5' -54.3 NC_006146.1 + 123325 0.68 0.885106
Target:  5'- gGUgUGCAGCUGCuggaagagGGGGugAcgguuguaGGCCGCg -3'
miRNA:   3'- -UAgAUGUUGACG--------CCCCugU--------UCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 94928 0.67 0.923159
Target:  5'- ---cGCAGacgaUGCaGGGGACGuGGCCGCUg -3'
miRNA:   3'- uagaUGUUg---ACG-CCCCUGU-UCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135306 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 10890 0.66 0.943581
Target:  5'- ---gACAGCgggGCGGuGGGCAAugcGCCACc -3'
miRNA:   3'- uagaUGUUGa--CGCC-CCUGUU---CGGUGa -5'
28898 5' -54.3 NC_006146.1 + 48962 0.67 0.923159
Target:  5'- uUCUugAGCUuccCGGGGAUGAGCguCUg -3'
miRNA:   3'- uAGAugUUGAc--GCCCCUGUUCGguGA- -5'
28898 5' -54.3 NC_006146.1 + 55191 0.7 0.775838
Target:  5'- -gCUGCGGCcGCGGcGGGCGAGCguCUc -3'
miRNA:   3'- uaGAUGUUGaCGCC-CCUGUUCGguGA- -5'
28898 5' -54.3 NC_006146.1 + 100831 0.66 0.948068
Target:  5'- -aCUACGcCUGUGGGGAgGuGgCACUg -3'
miRNA:   3'- uaGAUGUuGACGCCCCUgUuCgGUGA- -5'
28898 5' -54.3 NC_006146.1 + 129506 0.7 0.79461
Target:  5'- cGUCUACGuCUGCGGGuucGugGAGCgGCc -3'
miRNA:   3'- -UAGAUGUuGACGCCC---CugUUCGgUGa -5'
28898 5' -54.3 NC_006146.1 + 119855 0.67 0.911454
Target:  5'- uUCUACAggauaACaGCGGGGGaAGGCCAg- -3'
miRNA:   3'- uAGAUGU-----UGaCGCCCCUgUUCGGUga -5'
28898 5' -54.3 NC_006146.1 + 135213 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 135492 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 122967 0.69 0.81277
Target:  5'- ---cGCAGCgggagGCGGGGAgGuGCCACa -3'
miRNA:   3'- uagaUGUUGa----CGCCCCUgUuCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 135123 0.68 0.862882
Target:  5'- gGUUUGCucCgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- -UAGAUGuuGaCGCCCCU-----GUUCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.