miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2890 5' -56.5 NC_001493.1 + 52166 0.66 0.870332
Target:  5'- aGCAUUCacauggCGGGGGaGUuuuucGCGGAGGAGAa -3'
miRNA:   3'- -UGUGAGg-----GCCCCC-CA-----CGUCUUCUUUg -5'
2890 5' -56.5 NC_001493.1 + 105879 0.66 0.862765
Target:  5'- uACACggagacgaggUCCCGGGGGGUG-AGGGu---- -3'
miRNA:   3'- -UGUG----------AGGGCCCCCCACgUCUUcuuug -5'
2890 5' -56.5 NC_001493.1 + 8338 0.66 0.846998
Target:  5'- aGCGCgguucgggCCGGGGGGU-CGGAGGcucgGAACa -3'
miRNA:   3'- -UGUGag------GGCCCCCCAcGUCUUC----UUUG- -5'
2890 5' -56.5 NC_001493.1 + 123892 0.66 0.846998
Target:  5'- aGCGCgguucgggCCGGGGGGU-CGGAGGcucgGAACa -3'
miRNA:   3'- -UGUGag------GGCCCCCCAcGUCUUC----UUUG- -5'
2890 5' -56.5 NC_001493.1 + 94702 0.66 0.846998
Target:  5'- gUACgUCCCGGuGGGUGCcacGGggGCg -3'
miRNA:   3'- uGUG-AGGGCCcCCCACGucuUCuuUG- -5'
2890 5' -56.5 NC_001493.1 + 15582 0.67 0.813128
Target:  5'- -aACUCCCcguccGGaacccgcaaGGGGUgaccGCAGGAGAGACg -3'
miRNA:   3'- ugUGAGGG-----CC---------CCCCA----CGUCUUCUUUG- -5'
2890 5' -56.5 NC_001493.1 + 131137 0.67 0.813128
Target:  5'- -aACUCCCcguccGGaacccgcaaGGGGUgaccGCAGGAGAGACg -3'
miRNA:   3'- ugUGAGGG-----CC---------CCCCA----CGUCUUCUUUG- -5'
2890 5' -56.5 NC_001493.1 + 4715 0.67 0.813128
Target:  5'- gGCACaCCCGGGGGcGcggcagcgGCGGggGucACc -3'
miRNA:   3'- -UGUGaGGGCCCCC-Ca-------CGUCuuCuuUG- -5'
2890 5' -56.5 NC_001493.1 + 39983 0.67 0.804219
Target:  5'- -aACUCUguacugUGGGGGGUGguGu-GGAGCg -3'
miRNA:   3'- ugUGAGG------GCCCCCCACguCuuCUUUG- -5'
2890 5' -56.5 NC_001493.1 + 120863 0.67 0.804219
Target:  5'- cACGCUCggccccggugaCCGGGGGGcugGCGGguGAGu- -3'
miRNA:   3'- -UGUGAG-----------GGCCCCCCa--CGUCuuCUUug -5'
2890 5' -56.5 NC_001493.1 + 5309 0.67 0.804219
Target:  5'- cACGCUCggccccggugaCCGGGGGGcugGCGGguGAGu- -3'
miRNA:   3'- -UGUGAG-----------GGCCCCCCa--CGUCuuCUUug -5'
2890 5' -56.5 NC_001493.1 + 31932 0.67 0.798797
Target:  5'- gAUACUCaaGGGGGGUGgAGAcccgcgcuccgugauGGAucgaGACg -3'
miRNA:   3'- -UGUGAGggCCCCCCACgUCU---------------UCU----UUG- -5'
2890 5' -56.5 NC_001493.1 + 120269 0.67 0.785932
Target:  5'- gGCACaCCCGGGGGccggcagcgGCGGggGucACc -3'
miRNA:   3'- -UGUGaGGGCCCCCca-------CGUCuuCuuUG- -5'
2890 5' -56.5 NC_001493.1 + 19619 0.68 0.767078
Target:  5'- gACGCUCUccgaguguagugCGGGGGGUGacguGGggGCc -3'
miRNA:   3'- -UGUGAGG------------GCCCCCCACgucuUCuuUG- -5'
2890 5' -56.5 NC_001493.1 + 87231 0.69 0.70787
Target:  5'- ----aCUCGGGGGGUccaacGCGGggGGGAUa -3'
miRNA:   3'- ugugaGGGCCCCCCA-----CGUCuuCUUUG- -5'
2890 5' -56.5 NC_001493.1 + 52084 0.69 0.687507
Target:  5'- gAUACUCgCGGGGGGUGUuccGGguGuAGCu -3'
miRNA:   3'- -UGUGAGgGCCCCCCACG---UCuuCuUUG- -5'
2890 5' -56.5 NC_001493.1 + 5542 0.7 0.615221
Target:  5'- -gGCUCCCGGacuuGG-GCGGGAGGAGCg -3'
miRNA:   3'- ugUGAGGGCCcc--CCaCGUCUUCUUUG- -5'
2890 5' -56.5 NC_001493.1 + 121097 0.7 0.615221
Target:  5'- -gGCUCCCGGacuuGG-GCGGGAGGAGCg -3'
miRNA:   3'- ugUGAGGGCCcc--CCaCGUCUUCUUUG- -5'
2890 5' -56.5 NC_001493.1 + 87831 0.71 0.58427
Target:  5'- uACGC-CCCGGGGGGUaggucCAGggGuAGAUc -3'
miRNA:   3'- -UGUGaGGGCCCCCCAc----GUCuuC-UUUG- -5'
2890 5' -56.5 NC_001493.1 + 107585 0.71 0.553636
Target:  5'- gACACcggUCCCGGGGGG-GUGGccGGAAUc -3'
miRNA:   3'- -UGUG---AGGGCCCCCCaCGUCuuCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.