miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 5' -61.4 NC_001493.1 + 112672 0.7 0.437693
Target:  5'- cGAGCcuGCgCCCGAGAUcCCCGAugGCCuGGa -3'
miRNA:   3'- -CUCG--CG-GGGCUCUGaGGGCU--UGGcCC- -5'
2891 5' -61.4 NC_001493.1 + 29114 0.7 0.437693
Target:  5'- gGAGCGCCUCGAGcGCgUCCUuuuuGGuCCGGGc -3'
miRNA:   3'- -CUCGCGGGGCUC-UG-AGGG----CUuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 4565 0.7 0.445521
Target:  5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3'
miRNA:   3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5'
2891 5' -61.4 NC_001493.1 + 120119 0.7 0.445521
Target:  5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3'
miRNA:   3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5'
2891 5' -61.4 NC_001493.1 + 16255 0.7 0.455193
Target:  5'- cGAGCggucgaGCCCCGGGACggcCCCGuacucGACCaGGa -3'
miRNA:   3'- -CUCG------CGGGGCUCUGa--GGGC-----UUGGcCC- -5'
2891 5' -61.4 NC_001493.1 + 131809 0.7 0.455193
Target:  5'- cGAGCggucgaGCCCCGGGACggcCCCGuacucGACCaGGa -3'
miRNA:   3'- -CUCG------CGGGGCUCUGa--GGGC-----UUGGcCC- -5'
2891 5' -61.4 NC_001493.1 + 96232 0.7 0.456078
Target:  5'- uAGCGCCCgCGGGAUgacuauguucacgcaCCCGAACgucaCGGGg -3'
miRNA:   3'- cUCGCGGG-GCUCUGa--------------GGGCUUG----GCCC- -5'
2891 5' -61.4 NC_001493.1 + 19594 0.7 0.46319
Target:  5'- cGGUGCCgCGGGAgcguaccCUCCgCGAaauACCGGGg -3'
miRNA:   3'- cUCGCGGgGCUCU-------GAGG-GCU---UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 128859 0.69 0.472162
Target:  5'- cGGCGCUCCGGucucGCUCCgGucuuauaGACCGGGg -3'
miRNA:   3'- cUCGCGGGGCUc---UGAGGgC-------UUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 13305 0.69 0.472162
Target:  5'- cGGCGCUCCGGucucGCUCCgGucuuauaGACCGGGg -3'
miRNA:   3'- cUCGCGGGGCUc---UGAGGgC-------UUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 103533 0.69 0.482131
Target:  5'- gGAGUaCCCCGcGAC-CCCGGucgucaacACCGGGu -3'
miRNA:   3'- -CUCGcGGGGCuCUGaGGGCU--------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 17783 0.69 0.500511
Target:  5'- -cGCGCcaCCCGAGcgaUCCCgGggUCGGGg -3'
miRNA:   3'- cuCGCG--GGGCUCug-AGGG-CuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 42071 0.69 0.500511
Target:  5'- gGGGCgGCCCCGGGACgugCCCccugugucuCCGGa -3'
miRNA:   3'- -CUCG-CGGGGCUCUGa--GGGcuu------GGCCc -5'
2891 5' -61.4 NC_001493.1 + 22094 0.69 0.500511
Target:  5'- aGGGuCGCgaUCGGGACguaCCCGggUCGGGa -3'
miRNA:   3'- -CUC-GCGg-GGCUCUGa--GGGCuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 52698 0.69 0.500511
Target:  5'- uGAGCGaCCCUGAG-CUCCUGAACa--- -3'
miRNA:   3'- -CUCGC-GGGGCUCuGAGGGCUUGgccc -5'
2891 5' -61.4 NC_001493.1 + 133337 0.69 0.500511
Target:  5'- -cGCGCcaCCCGAGcgaUCCCgGggUCGGGg -3'
miRNA:   3'- cuCGCG--GGGCUCug-AGGG-CuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 121410 0.69 0.519194
Target:  5'- aGGGCGUuuCCCGGGggagcugccACUCUCGAugCGGa -3'
miRNA:   3'- -CUCGCG--GGGCUC---------UGAGGGCUugGCCc -5'
2891 5' -61.4 NC_001493.1 + 5856 0.69 0.519194
Target:  5'- aGGGCGUuuCCCGGGggagcugccACUCUCGAugCGGa -3'
miRNA:   3'- -CUCGCG--GGGCUC---------UGAGGGCUugGCCc -5'
2891 5' -61.4 NC_001493.1 + 64441 0.68 0.528638
Target:  5'- -uGCGCUCguacaccaaCGAGACUcccaccCCCGGGCCGGa -3'
miRNA:   3'- cuCGCGGG---------GCUCUGA------GGGCUUGGCCc -5'
2891 5' -61.4 NC_001493.1 + 126395 0.68 0.538146
Target:  5'- -cGCGaUCCGGGACUCuCCGGGugucgaacCCGGGg -3'
miRNA:   3'- cuCGCgGGGCUCUGAG-GGCUU--------GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.