miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 5' -61.4 NC_001493.1 + 15279 1.1 0.000846
Target:  5'- uGAGCGCCCCGAGACUCCCGAACCGGGg -3'
miRNA:   3'- -CUCGCGGGGCUCUGAGGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 130833 1.1 0.000846
Target:  5'- uGAGCGCCCCGAGACUCCCGAACCGGGg -3'
miRNA:   3'- -CUCGCGGGGCUCUGAGGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 87719 0.79 0.123959
Target:  5'- uGAGCGCCCCGGGAggugagCCCGcGACCGGc -3'
miRNA:   3'- -CUCGCGGGGCUCUga----GGGC-UUGGCCc -5'
2891 5' -61.4 NC_001493.1 + 126344 0.75 0.222268
Target:  5'- -cGCGUCCCGAGAgUCUCG-ACCGcGGa -3'
miRNA:   3'- cuCGCGGGGCUCUgAGGGCuUGGC-CC- -5'
2891 5' -61.4 NC_001493.1 + 10790 0.75 0.222268
Target:  5'- -cGCGUCCCGAGAgUCUCG-ACCGcGGa -3'
miRNA:   3'- cuCGCGGGGCUCUgAGGGCuUGGC-CC- -5'
2891 5' -61.4 NC_001493.1 + 12682 0.75 0.232931
Target:  5'- cGAGCGCCCCGA--C-CCCGGAcgcgacCCGGGa -3'
miRNA:   3'- -CUCGCGGGGCUcuGaGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 128236 0.75 0.232931
Target:  5'- cGAGCGCCCCGA--C-CCCGGAcgcgacCCGGGa -3'
miRNA:   3'- -CUCGCGGGGCUcuGaGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 12741 0.74 0.261473
Target:  5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3'
miRNA:   3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 128295 0.74 0.261473
Target:  5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3'
miRNA:   3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 123995 0.73 0.278038
Target:  5'- uGGCGCCgcgCCGGGGCUCCCacccaucggugcugGAGCgCGGGu -3'
miRNA:   3'- cUCGCGG---GGCUCUGAGGG--------------CUUG-GCCC- -5'
2891 5' -61.4 NC_001493.1 + 8441 0.73 0.278038
Target:  5'- uGGCGCCgcgCCGGGGCUCCCacccaucggugcugGAGCgCGGGu -3'
miRNA:   3'- cUCGCGG---GGCUCUGAGGG--------------CUUG-GCCC- -5'
2891 5' -61.4 NC_001493.1 + 12864 0.73 0.292799
Target:  5'- aGGCuCCCCcguggGAGACUCCCGGGucgcguCCGGGg -3'
miRNA:   3'- cUCGcGGGG-----CUCUGAGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 128418 0.73 0.292799
Target:  5'- aGGCuCCCCcguggGAGACUCCCGGGucgcguCCGGGg -3'
miRNA:   3'- cUCGcGGGG-----CUCUGAGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 132256 0.73 0.312274
Target:  5'- cGGGCcucucGCCCUGGGGCacccUCCCGGuccucucACCGGGg -3'
miRNA:   3'- -CUCG-----CGGGGCUCUG----AGGGCU-------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 130234 0.72 0.348869
Target:  5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3'
miRNA:   3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 14680 0.72 0.348869
Target:  5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3'
miRNA:   3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 107224 0.72 0.355635
Target:  5'- cGGGCGCCCCGgcggucgaccugaGGGCggcCCCGGuuCUGGGu -3'
miRNA:   3'- -CUCGCGGGGC-------------UCUGa--GGGCUu-GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 44472 0.72 0.356393
Target:  5'- cGAGCgGUUCCGGGGCcugCUCGGGCCGGa -3'
miRNA:   3'- -CUCG-CGGGGCUCUGa--GGGCUUGGCCc -5'
2891 5' -61.4 NC_001493.1 + 129017 0.71 0.403888
Target:  5'- cAGUuCCCCGAGuCUCCCagGGGCCGGu -3'
miRNA:   3'- cUCGcGGGGCUCuGAGGG--CUUGGCCc -5'
2891 5' -61.4 NC_001493.1 + 13463 0.71 0.403888
Target:  5'- cAGUuCCCCGAGuCUCCCagGGGCCGGu -3'
miRNA:   3'- cUCGcGGGGCUCuGAGGG--CUUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.