miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 5' -61.4 NC_001493.1 + 48125 0.67 0.625669
Target:  5'- cGGCGCaCCCGAccccguaacugGACUcuacucccagugCCCGAcgcucgugGCCGGGu -3'
miRNA:   3'- cUCGCG-GGGCU-----------CUGA------------GGGCU--------UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 100199 0.68 0.547711
Target:  5'- cGGGCGCCUgugcaagauCGAGAauCUCgCgGAACUGGGu -3'
miRNA:   3'- -CUCGCGGG---------GCUCU--GAG-GgCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 23753 0.68 0.557329
Target:  5'- aGAGCGCUCCGAGGCacguaGAACCGc- -3'
miRNA:   3'- -CUCGCGGGGCUCUGaggg-CUUGGCcc -5'
2891 5' -61.4 NC_001493.1 + 13588 0.68 0.557329
Target:  5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3'
miRNA:   3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 129142 0.68 0.557329
Target:  5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3'
miRNA:   3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 112709 0.67 0.606023
Target:  5'- cGGGCGaUCCCGGGGCUUCuCGA--UGGGu -3'
miRNA:   3'- -CUCGC-GGGGCUCUGAGG-GCUugGCCC- -5'
2891 5' -61.4 NC_001493.1 + 69916 0.67 0.609948
Target:  5'- aGGaUGCCCCGguuucugacacggugGGACUCCUGAGCauGGa -3'
miRNA:   3'- cUC-GCGGGGC---------------UCUGAGGGCUUGgcCC- -5'
2891 5' -61.4 NC_001493.1 + 113630 0.67 0.625669
Target:  5'- gGAGCGaCCCUGuguGACUCgUGucUCGGGg -3'
miRNA:   3'- -CUCGC-GGGGCu--CUGAGgGCuuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 43750 0.67 0.625669
Target:  5'- ---aGCCCCGAuGACUCCgCGAugGCCGu- -3'
miRNA:   3'- cucgCGGGGCU-CUGAGG-GCU--UGGCcc -5'
2891 5' -61.4 NC_001493.1 + 42071 0.69 0.500511
Target:  5'- gGGGCgGCCCCGGGACgugCCCccugugucuCCGGa -3'
miRNA:   3'- -CUCG-CGGGGCUCUGa--GGGcuu------GGCCc -5'
2891 5' -61.4 NC_001493.1 + 19594 0.7 0.46319
Target:  5'- cGGUGCCgCGGGAgcguaccCUCCgCGAaauACCGGGg -3'
miRNA:   3'- cUCGCGGgGCUCU-------GAGG-GCU---UGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 120119 0.7 0.445521
Target:  5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3'
miRNA:   3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5'
2891 5' -61.4 NC_001493.1 + 128236 0.75 0.232931
Target:  5'- cGAGCGCCCCGA--C-CCCGGAcgcgacCCGGGa -3'
miRNA:   3'- -CUCGCGGGGCUcuGaGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 12741 0.74 0.261473
Target:  5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3'
miRNA:   3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 128295 0.74 0.261473
Target:  5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3'
miRNA:   3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 14680 0.72 0.348869
Target:  5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3'
miRNA:   3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 130234 0.72 0.348869
Target:  5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3'
miRNA:   3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 29114 0.7 0.437693
Target:  5'- gGAGCGCCUCGAGcGCgUCCUuuuuGGuCCGGGc -3'
miRNA:   3'- -CUCGCGGGGCUC-UG-AGGG----CUuGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 112672 0.7 0.437693
Target:  5'- cGAGCcuGCgCCCGAGAUcCCCGAugGCCuGGa -3'
miRNA:   3'- -CUCG--CG-GGGCUCUGaGGGCU--UGGcCC- -5'
2891 5' -61.4 NC_001493.1 + 4565 0.7 0.445521
Target:  5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3'
miRNA:   3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.