miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2891 5' -61.4 NC_001493.1 + 254 0.67 0.635503
Target:  5'- aGGGCGUaaCCCGAaag-UUCGAACCGGGa -3'
miRNA:   3'- -CUCGCG--GGGCUcugaGGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 4565 0.7 0.445521
Target:  5'- -cGCGcCCCCGGGugUgcccaaaCCCGAACaCGGa -3'
miRNA:   3'- cuCGC-GGGGCUCugA-------GGGCUUG-GCCc -5'
2891 5' -61.4 NC_001493.1 + 5856 0.69 0.519194
Target:  5'- aGGGCGUuuCCCGGGggagcugccACUCUCGAugCGGa -3'
miRNA:   3'- -CUCGCG--GGGCUC---------UGAGGGCUugGCCc -5'
2891 5' -61.4 NC_001493.1 + 8350 0.68 0.557329
Target:  5'- cGAuCGCCCUGAaGCgcggUUCGGGCCGGGg -3'
miRNA:   3'- -CUcGCGGGGCUcUGa---GGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 8441 0.73 0.278038
Target:  5'- uGGCGCCgcgCCGGGGCUCCCacccaucggugcugGAGCgCGGGu -3'
miRNA:   3'- cUCGCGG---GGCUCUGAGGG--------------CUUG-GCCC- -5'
2891 5' -61.4 NC_001493.1 + 9282 0.68 0.577677
Target:  5'- gGAGCGCggucgcggggaugacCCCGcGGCUCCCGuugaccgcgcaaaaGACCcGGGu -3'
miRNA:   3'- -CUCGCG---------------GGGCuCUGAGGGC--------------UUGG-CCC- -5'
2891 5' -61.4 NC_001493.1 + 10790 0.75 0.222268
Target:  5'- -cGCGUCCCGAGAgUCUCG-ACCGcGGa -3'
miRNA:   3'- cuCGCGGGGCUCUgAGGGCuUGGC-CC- -5'
2891 5' -61.4 NC_001493.1 + 10841 0.68 0.538146
Target:  5'- -cGCGaUCCGGGACUCuCCGGGugucgaacCCGGGg -3'
miRNA:   3'- cuCGCgGGGCUCUGAG-GGCUU--------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 11082 0.68 0.547711
Target:  5'- uGAGCGCCCUGuAGAC-CUCGGcgaggAUCGGa -3'
miRNA:   3'- -CUCGCGGGGC-UCUGaGGGCU-----UGGCCc -5'
2891 5' -61.4 NC_001493.1 + 11133 0.66 0.646316
Target:  5'- cGAGgGCuCCCGGGACcagggcucgaugaccCCCGAGgCGGa -3'
miRNA:   3'- -CUCgCG-GGGCUCUGa--------------GGGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 12682 0.75 0.232931
Target:  5'- cGAGCGCCCCGA--C-CCCGGAcgcgacCCGGGa -3'
miRNA:   3'- -CUCGCGGGGCUcuGaGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 12741 0.74 0.261473
Target:  5'- cGGGCGCUcuccaCCGAGACccccacUCCCGAAccuucCCGGGa -3'
miRNA:   3'- -CUCGCGG-----GGCUCUG------AGGGCUU-----GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 12864 0.73 0.292799
Target:  5'- aGGCuCCCCcguggGAGACUCCCGGGucgcguCCGGGg -3'
miRNA:   3'- cUCGcGGGG-----CUCUGAGGGCUU------GGCCC- -5'
2891 5' -61.4 NC_001493.1 + 13305 0.69 0.472162
Target:  5'- cGGCGCUCCGGucucGCUCCgGucuuauaGACCGGGg -3'
miRNA:   3'- cUCGCGGGGCUc---UGAGGgC-------UUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 13463 0.71 0.403888
Target:  5'- cAGUuCCCCGAGuCUCCCagGGGCCGGu -3'
miRNA:   3'- cUCGcGGGGCUCuGAGGG--CUUGGCCc -5'
2891 5' -61.4 NC_001493.1 + 13588 0.68 0.557329
Target:  5'- --cCGUCCCGAGGCUCaCGAAgCGGu -3'
miRNA:   3'- cucGCGGGGCUCUGAGgGCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 14680 0.72 0.348869
Target:  5'- gGAGUGUCCCGAGugcgGCUCCgGGGgCGGa -3'
miRNA:   3'- -CUCGCGGGGCUC----UGAGGgCUUgGCCc -5'
2891 5' -61.4 NC_001493.1 + 14958 0.66 0.691287
Target:  5'- uAGCGCuCCCGcuccGCUCCUGGACgaccucgucgagcuCGGGg -3'
miRNA:   3'- cUCGCG-GGGCuc--UGAGGGCUUG--------------GCCC- -5'
2891 5' -61.4 NC_001493.1 + 15279 1.1 0.000846
Target:  5'- uGAGCGCCCCGAGACUCCCGAACCGGGg -3'
miRNA:   3'- -CUCGCGGGGCUCUGAGGGCUUGGCCC- -5'
2891 5' -61.4 NC_001493.1 + 15698 0.66 0.664959
Target:  5'- uGAGCGCaUCGAGAC-CCU---CCGGGg -3'
miRNA:   3'- -CUCGCGgGGCUCUGaGGGcuuGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.