miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 3' -53.6 NC_006146.1 + 156954 0.66 0.969085
Target:  5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3'
miRNA:   3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5'
28917 3' -53.6 NC_006146.1 + 50355 0.66 0.969085
Target:  5'- gGCCAGCcUgGGGAuCUUGGCCAg--- -3'
miRNA:   3'- -UGGUUGaAgUCCUcGGACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 62117 0.66 0.969085
Target:  5'- cGCCu-CggCGGGAGaCCUG-CCAUUGGa -3'
miRNA:   3'- -UGGuuGaaGUCCUC-GGACcGGUAACU- -5'
28917 3' -53.6 NC_006146.1 + 141565 0.66 0.969085
Target:  5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3'
miRNA:   3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5'
28917 3' -53.6 NC_006146.1 + 144643 0.66 0.969085
Target:  5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3'
miRNA:   3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5'
28917 3' -53.6 NC_006146.1 + 147720 0.66 0.969085
Target:  5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3'
miRNA:   3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5'
28917 3' -53.6 NC_006146.1 + 153876 0.66 0.969085
Target:  5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3'
miRNA:   3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5'
28917 3' -53.6 NC_006146.1 + 150798 0.66 0.969085
Target:  5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3'
miRNA:   3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5'
28917 3' -53.6 NC_006146.1 + 45521 0.66 0.965917
Target:  5'- gGCC-ACggUGGGGGCCUgGGCCuccUUGGg -3'
miRNA:   3'- -UGGuUGaaGUCCUCGGA-CCGGu--AACU- -5'
28917 3' -53.6 NC_006146.1 + 97262 0.66 0.965917
Target:  5'- uACCGGag-CAGucGCCUGGCCAUc-- -3'
miRNA:   3'- -UGGUUgaaGUCcuCGGACCGGUAacu -5'
28917 3' -53.6 NC_006146.1 + 40809 0.66 0.965917
Target:  5'- aGCCGGCgUCAauGGCCuUGGCCAU-GAg -3'
miRNA:   3'- -UGGUUGaAGUccUCGG-ACCGGUAaCU- -5'
28917 3' -53.6 NC_006146.1 + 52132 0.66 0.964924
Target:  5'- cACCAGC-UCGGGccccaccaggucgaAGCCgcuGCCGUUGGc -3'
miRNA:   3'- -UGGUUGaAGUCC--------------UCGGac-CGGUAACU- -5'
28917 3' -53.6 NC_006146.1 + 167078 0.66 0.962527
Target:  5'- cGCCGGCUcCaaaaaagugagGGGGGCgUGGCCAUc-- -3'
miRNA:   3'- -UGGUUGAaG-----------UCCUCGgACCGGUAacu -5'
28917 3' -53.6 NC_006146.1 + 101166 0.66 0.95506
Target:  5'- uCCAAcCUUUaccuGGGcuGCCUGGCCcUUGAa -3'
miRNA:   3'- uGGUU-GAAG----UCCu-CGGACCGGuAACU- -5'
28917 3' -53.6 NC_006146.1 + 124574 0.66 0.950972
Target:  5'- uACCGGCUggUCAGaAGCCcGGCCGa--- -3'
miRNA:   3'- -UGGUUGA--AGUCcUCGGaCCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 31815 0.67 0.946643
Target:  5'- cCCAACUcCAGGcgaGGCCcgUGGCCAa--- -3'
miRNA:   3'- uGGUUGAaGUCC---UCGG--ACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 74493 0.67 0.946643
Target:  5'- cGCUGugUUCAGGAGC-UGGCaCAUc-- -3'
miRNA:   3'- -UGGUugAAGUCCUCGgACCG-GUAacu -5'
28917 3' -53.6 NC_006146.1 + 23348 0.67 0.94207
Target:  5'- gACCGACcUCAGc-GCCUGGCgCGUgGAa -3'
miRNA:   3'- -UGGUUGaAGUCcuCGGACCG-GUAaCU- -5'
28917 3' -53.6 NC_006146.1 + 160073 0.67 0.941599
Target:  5'- gGCUGGCUUC-GGAGCCuaucucaUGGCCcaUGGg -3'
miRNA:   3'- -UGGUUGAAGuCCUCGG-------ACCGGuaACU- -5'
28917 3' -53.6 NC_006146.1 + 152090 0.67 0.93725
Target:  5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3'
miRNA:   3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.