miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 67223 0.73 0.413991
Target:  5'- gCCUGGcCGGCCAGgcacaggaagccacGGAGGCUggGGg- -3'
miRNA:   3'- aGGACU-GCCGGUU--------------CCUCCGGuuCCac -5'
28917 5' -58.4 NC_006146.1 + 120502 0.73 0.416564
Target:  5'- cCCUGGCGGCCGAGGAcgcGaGCCGc-GUGg -3'
miRNA:   3'- aGGACUGCCGGUUCCU---C-CGGUucCAC- -5'
28917 5' -58.4 NC_006146.1 + 137834 0.73 0.416565
Target:  5'- aCCUGGaaGgCAGGGGGGCuCGGGGUGg -3'
miRNA:   3'- aGGACUgcCgGUUCCUCCG-GUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 125362 0.73 0.425214
Target:  5'- gCCagGGCGGCCAagcccaAGGAGGCCcAGGc- -3'
miRNA:   3'- aGGa-CUGCCGGU------UCCUCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 77242 0.73 0.433969
Target:  5'- aUCUGACGGCCAcuuuAGGGuGUgAAGGUGg -3'
miRNA:   3'- aGGACUGCCGGU----UCCUcCGgUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 111657 0.73 0.4375
Target:  5'- cCCUGAacacccaGGCCcauGGAGGCCAugucccuggagucguAGGUGg -3'
miRNA:   3'- aGGACUg------CCGGuu-CCUCCGGU---------------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 59316 0.73 0.451788
Target:  5'- aCCUGGCuGGCCGA-GAGGCUGGcGGUGu -3'
miRNA:   3'- aGGACUG-CCGGUUcCUCCGGUU-CCAC- -5'
28917 5' -58.4 NC_006146.1 + 147437 0.72 0.470001
Target:  5'- aCCUGgccACGGCCAGGGccucguAGGCCGAGa-- -3'
miRNA:   3'- aGGAC---UGCCGGUUCC------UCCGGUUCcac -5'
28917 5' -58.4 NC_006146.1 + 49568 0.72 0.488579
Target:  5'- -aCUGA-GGCCcAGcgcuGAGGCCAGGGUGg -3'
miRNA:   3'- agGACUgCCGGuUC----CUCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 51175 0.72 0.507496
Target:  5'- -gCUGugGaGCCGGGGAGGCUgcucGAGGa- -3'
miRNA:   3'- agGACugC-CGGUUCCUCCGG----UUCCac -5'
28917 5' -58.4 NC_006146.1 + 43977 0.72 0.507496
Target:  5'- aUCCUGccaGCGGgaGAGGAGGCUgaguaggccgGAGGUGg -3'
miRNA:   3'- -AGGAC---UGCCggUUCCUCCGG----------UUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 56266 0.72 0.507496
Target:  5'- gUCCUcGGCGGggagCGAGGAGGCCAGGa-- -3'
miRNA:   3'- -AGGA-CUGCCg---GUUCCUCCGGUUCcac -5'
28917 5' -58.4 NC_006146.1 + 7896 0.71 0.517071
Target:  5'- gUCCaaaaGGCCcaaaGAGGAGGCCGAGGa- -3'
miRNA:   3'- -AGGacugCCGG----UUCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 14845 0.71 0.517071
Target:  5'- gCCcGG-GGCCGcGGGAGGCCGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGU-UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 145427 0.71 0.526717
Target:  5'- gCCgGGCaGGCCGggucuugggccuGGGAGGuCCGGGGUGu -3'
miRNA:   3'- aGGaCUG-CCGGU------------UCCUCC-GGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 151583 0.71 0.526717
Target:  5'- gCCgGGCaGGCCGggucuugggccuGGGAGGuCCGGGGUGu -3'
miRNA:   3'- aGGaCUG-CCGGU------------UCCUCC-GGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 117238 0.71 0.526717
Target:  5'- uUCCUGGaaagcggccggGGCCAGGGGGGUCGgcAGGUu -3'
miRNA:   3'- -AGGACUg----------CCGGUUCCUCCGGU--UCCAc -5'
28917 5' -58.4 NC_006146.1 + 142349 0.71 0.526717
Target:  5'- gCCgGGCaGGCCGggucuugggccuGGGAGGuCCGGGGUGu -3'
miRNA:   3'- aGGaCUG-CCGGU------------UCCUCC-GGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 157738 0.71 0.526717
Target:  5'- gCCgGGCaGGCCGggucuugggccuGGGAGGuCCGGGGUGu -3'
miRNA:   3'- aGGaCUG-CCGGU------------UCCUCC-GGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 148505 0.71 0.526717
Target:  5'- gCCgGGCaGGCCGggucuugggccuGGGAGGuCCGGGGUGu -3'
miRNA:   3'- aGGaCUG-CCGGU------------UCCUCC-GGUUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.