miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 3' -52.7 NC_006146.1 + 12281 1.12 0.003748
Target:  5'- cGCUACACCUACUGGCAGCUGAACCAGa -3'
miRNA:   3'- -CGAUGUGGAUGACCGUCGACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 14776 0.79 0.433732
Target:  5'- gGCUcggGCACCUGUUGGCGGCUGAggggaaggagagGCCGGc -3'
miRNA:   3'- -CGA---UGUGGAUGACCGUCGACU------------UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 127564 0.78 0.460833
Target:  5'- gGCUGCGCCUGCUGGCccugggcGGCcGAggccgcgccgGCCGGg -3'
miRNA:   3'- -CGAUGUGGAUGACCG-------UCGaCU----------UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 42746 0.76 0.592448
Target:  5'- cGCUGCaucGCCUGC-GGCAGCaGGGCCGa -3'
miRNA:   3'- -CGAUG---UGGAUGaCCGUCGaCUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 43053 0.75 0.623853
Target:  5'- -aUACGCCgcCUGGCGGUUGAgggguGCCAGc -3'
miRNA:   3'- cgAUGUGGauGACCGUCGACU-----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 8029 0.74 0.665777
Target:  5'- aCUGCAUCUaucGCUGGCAcccGCUGGACCc- -3'
miRNA:   3'- cGAUGUGGA---UGACCGU---CGACUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 104675 0.74 0.686603
Target:  5'- cCUGCGCCgcgAUagaggGGCAGCUGGGCCuGg -3'
miRNA:   3'- cGAUGUGGa--UGa----CCGUCGACUUGGuC- -5'
28918 3' -52.7 NC_006146.1 + 38107 0.74 0.70724
Target:  5'- cCUGCAgCUGCUGaGCAGCUgcGAGCCu- -3'
miRNA:   3'- cGAUGUgGAUGAC-CGUCGA--CUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 86497 0.73 0.717463
Target:  5'- aGCUGgGCCUugaggGGCAGCUGGGCUugAGg -3'
miRNA:   3'- -CGAUgUGGAuga--CCGUCGACUUGG--UC- -5'
28918 3' -52.7 NC_006146.1 + 86549 0.72 0.767227
Target:  5'- aGCUGgGCUUGaggGGCAGCUGGGCUugAGg -3'
miRNA:   3'- -CGAUgUGGAUga-CCGUCGACUUGG--UC- -5'
28918 3' -52.7 NC_006146.1 + 86583 0.72 0.767227
Target:  5'- aGCUGgGCUUGaggGGCAGCUGGGCUugAGg -3'
miRNA:   3'- -CGAUgUGGAUga-CCGUCGACUUGG--UC- -5'
28918 3' -52.7 NC_006146.1 + 117023 0.72 0.786318
Target:  5'- gGCUACGCCcuaACgggGGC-GCUGAggGCCAGc -3'
miRNA:   3'- -CGAUGUGGa--UGa--CCGuCGACU--UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 155465 0.72 0.786318
Target:  5'- uGCUGCGCCaggcaggACU-GCAGCcGGGCCAGc -3'
miRNA:   3'- -CGAUGUGGa------UGAcCGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 115398 0.71 0.813838
Target:  5'- cGCU-CGCgUGCaggaGGCAGCUGGcgGCCGGg -3'
miRNA:   3'- -CGAuGUGgAUGa---CCGUCGACU--UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 86617 0.71 0.822677
Target:  5'- aGCUGgGCUUGaggGGCAGCUGGGCaGGa -3'
miRNA:   3'- -CGAUgUGGAUga-CCGUCGACUUGgUC- -5'
28918 3' -52.7 NC_006146.1 + 48312 0.71 0.8398
Target:  5'- cCUcCACCgucggaggUGCUGGCGGUggUGGGCCAGg -3'
miRNA:   3'- cGAuGUGG--------AUGACCGUCG--ACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 86441 0.71 0.8398
Target:  5'- aGCUGgGCUUGaaggGGCAGCUGGGCUu- -3'
miRNA:   3'- -CGAUgUGGAUga--CCGUCGACUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 84355 0.71 0.848068
Target:  5'- cCUACACCUACagcaaGGUgcuaGGCgUGGACCGGg -3'
miRNA:   3'- cGAUGUGGAUGa----CCG----UCG-ACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 161522 0.7 0.879011
Target:  5'- cCUGCACCUccacaaaccCUGGCAGCUGccuguGACCu- -3'
miRNA:   3'- cGAUGUGGAu--------GACCGUCGAC-----UUGGuc -5'
28918 3' -52.7 NC_006146.1 + 88791 0.7 0.879011
Target:  5'- uGCUACagggcguggaGCCUGCUgGGCauguuuGGCUGGGCCuGa -3'
miRNA:   3'- -CGAUG----------UGGAUGA-CCG------UCGACUUGGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.