miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 3' -52.7 NC_006146.1 + 8029 0.74 0.665777
Target:  5'- aCUGCAUCUaucGCUGGCAcccGCUGGACCc- -3'
miRNA:   3'- cGAUGUGGA---UGACCGU---CGACUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 11547 0.66 0.975906
Target:  5'- aGCUACGCCcccgccaUGCUggaGGCGGCgcacGAgacGCCGGc -3'
miRNA:   3'- -CGAUGUGG-------AUGA---CCGUCGa---CU---UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 11967 0.68 0.939746
Target:  5'- cGCUACGCCUuuacCU-GCAGUUcuGCCAGg -3'
miRNA:   3'- -CGAUGUGGAu---GAcCGUCGAcuUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 12281 1.12 0.003748
Target:  5'- cGCUACACCUACUGGCAGCUGAACCAGa -3'
miRNA:   3'- -CGAUGUGGAUGACCGUCGACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 12856 0.66 0.982927
Target:  5'- --gGCGCCUggggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA--------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 14314 0.66 0.978604
Target:  5'- aGCUggcGCACCUGCUGGagaacucacGCaGGGCCGu -3'
miRNA:   3'- -CGA---UGUGGAUGACCgu-------CGaCUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 14776 0.79 0.433732
Target:  5'- gGCUcggGCACCUGUUGGCGGCUGAggggaaggagagGCCGGc -3'
miRNA:   3'- -CGA---UGUGGAUGACCGUCGACU------------UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 15264 0.66 0.97352
Target:  5'- gGCUcaaccGgGCCaUGCa-GCGGCUGAACCGGa -3'
miRNA:   3'- -CGA-----UgUGG-AUGacCGUCGACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 15438 0.68 0.92959
Target:  5'- gGCUGCAguCCUGcCUGGCgcAGCaGAGCgAGa -3'
miRNA:   3'- -CGAUGU--GGAU-GACCG--UCGaCUUGgUC- -5'
28918 3' -52.7 NC_006146.1 + 17863 0.67 0.957092
Target:  5'- --aAgACCUACgagGGcCAGCUGGGCaCGGa -3'
miRNA:   3'- cgaUgUGGAUGa--CC-GUCGACUUG-GUC- -5'
28918 3' -52.7 NC_006146.1 + 18959 0.66 0.97765
Target:  5'- uGgUGCGCCaGCggccccuagagagGGCGGCaGGGCCGGa -3'
miRNA:   3'- -CgAUGUGGaUGa------------CCGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 19012 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 22090 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 24089 0.66 0.978604
Target:  5'- cGCggccuCGCCUgggacGCgggucgagGGCGGCUGGcACCGGg -3'
miRNA:   3'- -CGau---GUGGA-----UGa-------CCGUCGACU-UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 24203 0.67 0.967613
Target:  5'- gGCUGgGCCUGCgaGGUucuGUUgGGGCCGGg -3'
miRNA:   3'- -CGAUgUGGAUGa-CCGu--CGA-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 24357 0.66 0.980857
Target:  5'- aGCUACAagUAgUGGC-GCaGGGCCAGc -3'
miRNA:   3'- -CGAUGUggAUgACCGuCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 25168 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 28246 0.66 0.98064
Target:  5'- --gGCGCCUgggcgagGCUgGGUGGCUGGgcagGCCGGg -3'
miRNA:   3'- cgaUGUGGA-------UGA-CCGUCGACU----UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 30182 0.67 0.957092
Target:  5'- cCUGCACCUug-GGCacauugaggAGCagGAGCCAGa -3'
miRNA:   3'- cGAUGUGGAugaCCG---------UCGa-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 38107 0.74 0.70724
Target:  5'- cCUGCAgCUGCUGaGCAGCUgcGAGCCu- -3'
miRNA:   3'- cGAUGUgGAUGAC-CGUCGA--CUUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.