miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 3' -52.7 NC_006146.1 + 155465 0.72 0.786318
Target:  5'- uGCUGCGCCaggcaggACU-GCAGCcGGGCCAGc -3'
miRNA:   3'- -CGAUGUGGa------UGAcCGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 137579 0.66 0.97352
Target:  5'- cGCUGC-CCggucCUGG-AGCUcGGGCCGGg -3'
miRNA:   3'- -CGAUGuGGau--GACCgUCGA-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 165914 0.66 0.976161
Target:  5'- aGCUGaggACUgUGCUGGCAGuCUGAGuuAGg -3'
miRNA:   3'- -CGAUg--UGG-AUGACCGUC-GACUUggUC- -5'
28918 3' -52.7 NC_006146.1 + 47031 0.66 0.982927
Target:  5'- cGCggGCGCC--CUGGguGCgagaagGGGCCGGu -3'
miRNA:   3'- -CGa-UGUGGauGACCguCGa-----CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 151392 0.7 0.8938
Target:  5'- cGCUGCugCagGCgggggauggcgcggcGGCAGCUGuACCAGc -3'
miRNA:   3'- -CGAUGugGa-UGa--------------CCGUCGACuUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 59905 0.69 0.899816
Target:  5'- cGCUGgccaACCUGCUGGUgcgcGGCUacGAGCUGGg -3'
miRNA:   3'- -CGAUg---UGGAUGACCG----UCGA--CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 41579 0.68 0.94445
Target:  5'- ---cCGCCUACUGGCuGGCcGAGgCGGa -3'
miRNA:   3'- cgauGUGGAUGACCG-UCGaCUUgGUC- -5'
28918 3' -52.7 NC_006146.1 + 118244 0.68 0.948907
Target:  5'- gGCUGCGCacgUACUGGgGGCcaGAGCCc- -3'
miRNA:   3'- -CGAUGUGg--AUGACCgUCGa-CUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 168286 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 115055 0.66 0.972967
Target:  5'- aCUGCACCUcgguguuGCUGGUGGCcGGGugcccacCCAGg -3'
miRNA:   3'- cGAUGUGGA-------UGACCGUCGaCUU-------GGUC- -5'
28918 3' -52.7 NC_006146.1 + 170149 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 167354 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 48312 0.71 0.8398
Target:  5'- cCUcCACCgucggaggUGCUGGCGGUggUGGGCCAGg -3'
miRNA:   3'- cGAuGUGG--------AUGACCGUCG--ACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 112968 0.67 0.967613
Target:  5'- uGCaGCACCa--UGGCGGCgccGGCCAGc -3'
miRNA:   3'- -CGaUGUGGaugACCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 161522 0.7 0.879011
Target:  5'- cCUGCACCUccacaaaccCUGGCAGCUGccuguGACCu- -3'
miRNA:   3'- cGAUGUGGAu--------GACCGUCGAC-----UUGGuc -5'
28918 3' -52.7 NC_006146.1 + 42714 0.67 0.95312
Target:  5'- --aGCGCCcgcucggGCUGGCAGCcgcgGAuCCGGg -3'
miRNA:   3'- cgaUGUGGa------UGACCGUCGa---CUuGGUC- -5'
28918 3' -52.7 NC_006146.1 + 128601 0.66 0.970673
Target:  5'- gGCUGUACUUuCUGGC-GCUGGGCUAc -3'
miRNA:   3'- -CGAUGUGGAuGACCGuCGACUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 64846 0.66 0.975906
Target:  5'- gGCUGCACCUucugccagGCUccaaguccggaugGGCGGCcacGGCCAGc -3'
miRNA:   3'- -CGAUGUGGA--------UGA-------------CCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 53744 0.7 0.886183
Target:  5'- gGCUGCGCCgggGCgaagacgGGCGGCgggcgGAggucucGCCGGa -3'
miRNA:   3'- -CGAUGUGGa--UGa------CCGUCGa----CU------UGGUC- -5'
28918 3' -52.7 NC_006146.1 + 127039 0.68 0.928519
Target:  5'- cGCUGCGcgugucaccagaggcCCUcgaGCUGGCGGCgcgggaagccgaaaGGGCCAGg -3'
miRNA:   3'- -CGAUGU---------------GGA---UGACCGUCGa-------------CUUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.