Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 40827 | 0.66 | 0.889362 |
Target: 5'- uGGCcaUGagCUUGGUaagGGGCAggGGGCGCUc -3' miRNA: 3'- -CCG--ACa-GAGCCGa--CCCGUa-UCUGCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 25197 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 22119 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 28275 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 19041 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 12886 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 125600 | 0.66 | 0.887341 |
Target: 5'- aGCUGuUCUcCGGCUuuccaccgagggugGGGCAUGGGCu-- -3' miRNA: 3'- cCGAC-AGA-GCCGA--------------CCCGUAUCUGcga -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 88814 | 0.66 | 0.87552 |
Target: 5'- gGGCaUGUUU-GGCUGGGCcu-GAgGCUc -3' miRNA: 3'- -CCG-ACAGAgCCGACCCGuauCUgCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 124507 | 0.66 | 0.868278 |
Target: 5'- cGGCcugGUCUCGGCccuGGCGagGGACGg- -3' miRNA: 3'- -CCGa--CAGAGCCGac-CCGUa-UCUGCga -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 49082 | 0.66 | 0.860828 |
Target: 5'- gGGCUGaggCUcCGGCUGuGGCucAGGCgGCUu -3' miRNA: 3'- -CCGACa--GA-GCCGAC-CCGuaUCUG-CGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 110871 | 0.66 | 0.853176 |
Target: 5'- cGCUgcGUCUCgGGCUcGGGCGcAGGCGg- -3' miRNA: 3'- cCGA--CAGAG-CCGA-CCCGUaUCUGCga -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 99792 | 0.67 | 0.845329 |
Target: 5'- gGGCgcaggUGUCUCGGaaGGGCAccGGCGa- -3' miRNA: 3'- -CCG-----ACAGAGCCgaCCCGUauCUGCga -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 15964 | 0.67 | 0.845329 |
Target: 5'- aGGCcgGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa-CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 43628 | 0.67 | 0.837292 |
Target: 5'- aGGgaGUgggCGGCgGGGCGUGGcCGCc -3' miRNA: 3'- -CCgaCAga-GCCGaCCCGUAUCuGCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 83366 | 0.67 | 0.829073 |
Target: 5'- uGGCcGUCaUGGa-GGGCAUGGAgGCa -3' miRNA: 3'- -CCGaCAGaGCCgaCCCGUAUCUgCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 97792 | 0.67 | 0.829073 |
Target: 5'- cGCUGUUUCuGUaaacgGGGCccGGACGCUg -3' miRNA: 3'- cCGACAGAGcCGa----CCCGuaUCUGCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 33589 | 0.67 | 0.829073 |
Target: 5'- cGCUGguccggUUUGGgUGGGCGUGGucCGCg -3' miRNA: 3'- cCGACa-----GAGCCgACCCGUAUCu-GCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 102017 | 0.67 | 0.812116 |
Target: 5'- gGGCUGUCUccCGGCUaGGGacUGGAacuUGCUg -3' miRNA: 3'- -CCGACAGA--GCCGA-CCCguAUCU---GCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 13502 | 0.67 | 0.811251 |
Target: 5'- aGGCUGggaacCUgGGCuacuuuaUGGGCcgAGGCGUg -3' miRNA: 3'- -CCGACa----GAgCCG-------ACCCGuaUCUGCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 144383 | 0.68 | 0.803394 |
Target: 5'- uGGCUGUCUUGcCUGGGUGU-GugGg- -3' miRNA: 3'- -CCGACAGAGCcGACCCGUAuCugCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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