miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 3' -62 NC_006146.1 + 11363 1.09 0.000899
Target:  5'- gGCGCAGGCGCUGCGCGUCAGGCAGGUg -3'
miRNA:   3'- -CGCGUCCGCGACGCGCAGUCCGUCCA- -5'
28919 3' -62 NC_006146.1 + 110853 0.68 0.524862
Target:  5'- gGCGCccgaucagaGGGaCGCUGCgucucgggcucggGCG-CAGGCGGGg -3'
miRNA:   3'- -CGCG---------UCC-GCGACG-------------CGCaGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 43892 0.68 0.522969
Target:  5'- uGCGCAGGCugggagcccacagaGCUccgggaccGCGUcgcccggcaGUCGGGCGGGg -3'
miRNA:   3'- -CGCGUCCG--------------CGA--------CGCG---------CAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 128204 0.69 0.497696
Target:  5'- -aGCGGGCGCUGgGgGgcucugccagccUCAGGCAGc- -3'
miRNA:   3'- cgCGUCCGCGACgCgC------------AGUCCGUCca -5'
28919 3' -62 NC_006146.1 + 21247 0.69 0.487555
Target:  5'- cGUGCAGGCGCgcugccgGCGCGUgcucgaccuggugCuGGCGGa- -3'
miRNA:   3'- -CGCGUCCGCGa------CGCGCA-------------GuCCGUCca -5'
28919 3' -62 NC_006146.1 + 13557 0.7 0.443647
Target:  5'- gGCGcCGGGCGCcgggcUGCGCaagCAGGcCGGGg -3'
miRNA:   3'- -CGC-GUCCGCG-----ACGCGca-GUCC-GUCCa -5'
28919 3' -62 NC_006146.1 + 40280 0.7 0.424668
Target:  5'- gGCGCGGGCGgaG-GCGggccaaagaggcCGGGCAGGc -3'
miRNA:   3'- -CGCGUCCGCgaCgCGCa-----------GUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 50733 0.7 0.417887
Target:  5'- aGCGgGGGCGacgGgGCGUCGGGaAGGg -3'
miRNA:   3'- -CGCgUCCGCga-CgCGCAGUCCgUCCa -5'
28919 3' -62 NC_006146.1 + 161442 0.71 0.369209
Target:  5'- cCGCGGGaacccaagGCGCGUgGGGCGGGUa -3'
miRNA:   3'- cGCGUCCgcga----CGCGCAgUCCGUCCA- -5'
28919 3' -62 NC_006146.1 + 122674 0.67 0.592438
Target:  5'- cGCGC-GGCGCUcacccagGCGCGcCAGGCc--- -3'
miRNA:   3'- -CGCGuCCGCGA-------CGCGCaGUCCGucca -5'
28919 3' -62 NC_006146.1 + 54023 0.67 0.613059
Target:  5'- -aGCAGGCacuGCUGCGCcugGcCGGGCcGGa -3'
miRNA:   3'- cgCGUCCG---CGACGCG---CaGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 141294 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 19969 0.66 0.66227
Target:  5'- cCGgGGGCGuCUGCGagGUCAGG-AGGc -3'
miRNA:   3'- cGCgUCCGC-GACGCg-CAGUCCgUCCa -5'
28919 3' -62 NC_006146.1 + 156670 0.66 0.661289
Target:  5'- cGUGUGGGCgagguuuggggcgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- -CGCGUCCG-------------CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 77913 0.66 0.652444
Target:  5'- gGCGCAGGgGC-GgGCGgccucgCAGGUgccGGGg -3'
miRNA:   3'- -CGCGUCCgCGaCgCGCa-----GUCCG---UCCa -5'
28919 3' -62 NC_006146.1 + 14624 0.66 0.622902
Target:  5'- cUGCuGGCGCUGCGUGggGGaGCucauGGUg -3'
miRNA:   3'- cGCGuCCGCGACGCGCagUC-CGu---CCA- -5'
28919 3' -62 NC_006146.1 + 153606 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 150528 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 147450 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 144372 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.