miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 3' -55.5 NC_006146.1 + 147460 0.69 0.781597
Target:  5'- uAGGccGAgacGGGCAGCCGGAGCUu -3'
miRNA:   3'- cUCCuaUUagaCCCGUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 3250 0.69 0.790908
Target:  5'- gGGGGAUAGgggacCUGGGgacggcgcaGGCCAcGAGCCGg -3'
miRNA:   3'- -CUCCUAUUa----GACCCg--------UCGGU-CUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 150525 0.69 0.800072
Target:  5'- uAGGAUAAaguucuccuUCUGGGCcgcGGCCAGgAGgCAg -3'
miRNA:   3'- cUCCUAUU---------AGACCCG---UCGGUC-UCgGU- -5'
28921 3' -55.5 NC_006146.1 + 55649 0.68 0.80729
Target:  5'- cGAGGGgugca---GCAGCCGGAGCCAg -3'
miRNA:   3'- -CUCCUauuagaccCGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 42379 0.68 0.809079
Target:  5'- cAGGGUGggCgagGGGCGccCCAGGGCCAc -3'
miRNA:   3'- cUCCUAUuaGa--CCCGUc-GGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 157614 0.68 0.826589
Target:  5'- uGGGGGUAGUCgcgggcGGGCAccGCCuGGGUCu -3'
miRNA:   3'- -CUCCUAUUAGa-----CCCGU--CGGuCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 14858 0.68 0.826589
Target:  5'- gGAGGccGAgg-GGGCAGCCAggGAGCUg -3'
miRNA:   3'- -CUCCuaUUagaCCCGUCGGU--CUCGGu -5'
28921 3' -55.5 NC_006146.1 + 126798 0.68 0.835075
Target:  5'- ----------cGGGCAGCCGGGGCCu -3'
miRNA:   3'- cuccuauuagaCCCGUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 117233 0.68 0.835075
Target:  5'- -cGGGcuucCUGGaaaGCGGCCGGGGCCAg -3'
miRNA:   3'- cuCCUauuaGACC---CGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 75113 0.68 0.835075
Target:  5'- cGGGGccaguacagGAUCUGG--AGCCGGGGCCAg -3'
miRNA:   3'- -CUCCua-------UUAGACCcgUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 75041 0.68 0.835075
Target:  5'- cGGGGccaguacagGAUCUGG--AGCCGGGGCCAg -3'
miRNA:   3'- -CUCCua-------UUAGACCcgUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 24196 0.68 0.838417
Target:  5'- aGAGGAggg-CUGGGCcuGcgagguucuguugggGCCGGGGCCGc -3'
miRNA:   3'- -CUCCUauuaGACCCG--U---------------CGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 27617 0.68 0.843371
Target:  5'- -cGGGUccaCUGGGUGGCCAGggaaguuccgGGCCAg -3'
miRNA:   3'- cuCCUAuuaGACCCGUCGGUC----------UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 167385 0.67 0.851469
Target:  5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3'
miRNA:   3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 55034 0.67 0.851469
Target:  5'- cGGGAUGg---GGGUcggGGCCGGGGCCu -3'
miRNA:   3'- cUCCUAUuagaCCCG---UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 12862 0.67 0.851469
Target:  5'- uGGGGcgAggCUGGGUGGCUGGgcaGGCCGg -3'
miRNA:   3'- -CUCCuaUuaGACCCGUCGGUC---UCGGU- -5'
28921 3' -55.5 NC_006146.1 + 168317 0.67 0.851469
Target:  5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3'
miRNA:   3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 170180 0.67 0.851469
Target:  5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3'
miRNA:   3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 169249 0.67 0.851469
Target:  5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3'
miRNA:   3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 19946 0.67 0.859363
Target:  5'- -cGGccuccCUGGGCAGaUCAGGGCCGg -3'
miRNA:   3'- cuCCuauuaGACCCGUC-GGUCUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.